Variant report

Variant	rs1714532
Chromosome Location	chr15:73524373-73524374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73523932..73526335-chr15:73528553..73530917,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1017809	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1029	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1038136	0.85[EUR][1000 genomes]
rs11852881	0.85[EUR][1000 genomes]
rs11853109	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856383	0.88[EUR][1000 genomes]
rs11856433	0.88[EUR][1000 genomes]
rs11856466	0.88[EUR][1000 genomes]
rs11857053	0.88[EUR][1000 genomes]
rs12101540	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12101734	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13329282	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1382780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648248	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1678245	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957661	0.85[EUR][1000 genomes]
rs1714529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1714530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1812363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1842164	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1895842	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1963253	0.81[EUR][1000 genomes]
rs1963254	0.80[EUR][1000 genomes]
rs1979410	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2169952	0.88[EUR][1000 genomes]
rs2254390	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2254818	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2619259	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2623990	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2623996	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2624002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2660823	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547177	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572029	0.85[EUR][1000 genomes]
rs28582318	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28676873	0.88[EUR][1000 genomes]
rs28808999	0.88[EUR][1000 genomes]
rs28828370	0.88[EUR][1000 genomes]
rs4238459	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4287530	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4325518	0.88[EUR][1000 genomes]
rs4539561	0.85[EUR][1000 genomes]
rs4635304	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4776626	0.88[EUR][1000 genomes]
rs4777584	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs490567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs492448	0.94[AMR][1000 genomes]
rs514632	0.94[AMR][1000 genomes]
rs524457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs533460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs550212	0.94[AMR][1000 genomes]
rs55969660	0.88[EUR][1000 genomes]
rs57453823	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs576414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6495054	0.88[EUR][1000 genomes]
rs7176908	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180017	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73438015	0.83[EUR][1000 genomes]
rs7403367	0.88[EUR][1000 genomes]
rs7497831	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8031718	0.88[EUR][1000 genomes]
rs8034243	0.85[EUR][1000 genomes]
rs8035717	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8038411	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs899480	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920152	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920459	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920675	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
3	chr15:73509400-73525000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:73509600-73528800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:73516600-73528200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:73516800-73528600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:73517600-73528400	Weak transcription	Fetal Lung	lung
8	chr15:73518200-73528600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:73518200-73540800	Weak transcription	Colonic Mucosa	Colon
10	chr15:73518400-73531800	Weak transcription	Aorta	Aorta
11	chr15:73518600-73524800	Weak transcription	Lung	lung
12	chr15:73518600-73525000	Weak transcription	Brain Angular Gyrus	brain
13	chr15:73518600-73528600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:73518600-73528600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:73518600-73528800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:73518600-73529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:73518600-73534000	Weak transcription	Right Ventricle	heart
18	chr15:73518800-73524800	Weak transcription	Fetal Intestine Large	intestine
19	chr15:73518800-73526400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
21	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
22	chr15:73520400-73528400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:73520400-73528600	Weak transcription	Brain Anterior Caudate	brain
24	chr15:73520400-73528600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:73520800-73536400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:73521600-73526000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:73523000-73526600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:73523200-73525000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:73523200-73526400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:73523600-73524600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:73523600-73525200	Strong transcription	Fetal Intestine Small	intestine
36	chr15:73523800-73524400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:73523800-73524400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr15:73523800-73524400	Enhancers	Gastric	stomach
39	chr15:73523800-73524800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr15:73523800-73524800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr15:73523800-73525200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr15:73523800-73525200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr15:73523800-73525200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr15:73523800-73525400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:73523800-73525400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:73523800-73525400	Enhancers	Brain Hippocampus Middle	brain
47	chr15:73523800-73526800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:73523800-73527000	Enhancers	Brain Cingulate Gyrus	brain
49	chr15:73523800-73530200	Weak transcription	Adipose Nuclei	Adipose
50	chr15:73524000-73524400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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