Variant report

Variant	rs73438015
Chromosome Location	chr15:73337774-73337775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73334175..73339912-chr15:73340966..73347082,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1017809	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1029	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1038136	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11852881	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11853109	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11856383	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11856433	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11856466	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11857053	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12101540	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12101734	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13329282	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1382780	0.83[EUR][1000 genomes]
rs1678245	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16957661	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1714529	0.83[EUR][1000 genomes]
rs1714530	0.83[EUR][1000 genomes]
rs1714532	0.83[EUR][1000 genomes]
rs1812363	0.83[EUR][1000 genomes]
rs1842164	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1963253	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1963254	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1979410	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2169952	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2254390	0.80[EUR][1000 genomes]
rs2254818	0.80[EUR][1000 genomes]
rs2623990	0.80[EUR][1000 genomes]
rs2623996	0.83[EUR][1000 genomes]
rs2680347	0.83[EUR][1000 genomes]
rs2680351	0.83[EUR][1000 genomes]
rs28547177	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28572029	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28582318	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28645758	0.81[EUR][1000 genomes]
rs28676873	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28808999	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28828370	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4238459	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4287530	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4325518	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4539561	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4635304	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4776626	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4777584	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55969660	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57453823	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6495054	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7176908	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7180017	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7403367	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7497831	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8031718	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8034243	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8035499	0.86[EUR][1000 genomes]
rs8035717	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8038411	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs899480	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9920152	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9920459	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9920675	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73331000-73339200	Weak transcription	Pancreas	Pancrea
2	chr15:73336000-73343200	Weak transcription	Fetal Brain Female	brain
3	chr15:73336400-73339000	Weak transcription	Fetal Brain Male	brain
4	chr15:73337200-73341200	Weak transcription	Fetal Intestine Large	intestine

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