Variant report

Variant	rs13329282
Chromosome Location	chr15:73394387-73394388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73392625..73394510-chr15:73395683..73398549,2	K562	blood:
2	chr15:73075569..73078219-chr15:73393026..73394762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260898	Chromatin interaction
ENSG00000159322	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1017809	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1029	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1038136	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11852881	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11853109	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11856383	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856433	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856466	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11857053	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1382780	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1648248	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1678245	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16957661	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1714529	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1714530	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1714532	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1812363	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1842164	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1895842	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1963253	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1963254	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1979410	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2169952	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254390	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2254818	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2623990	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2623994	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2623996	0.88[EUR][1000 genomes]
rs2624002	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2660823	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2680347	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2680348	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2680350	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2680351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28547177	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28572029	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28582318	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28645758	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28676873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28808999	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28828370	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238459	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4287530	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4325518	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4539561	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4635304	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776626	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777584	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490567	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs524457	0.83[AMR][1000 genomes]
rs533460	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55969660	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57453823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs576414	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6495054	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176908	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7180017	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438015	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7403367	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7497831	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031718	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034243	1.00[CEU][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8035499	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8035717	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8038411	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs899480	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920152	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920459	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920675	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73371200-73397000	Weak transcription	Pancreas	Pancrea
2	chr15:73384600-73409200	Weak transcription	Fetal Lung	lung
3	chr15:73388800-73431200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:73389000-73401000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73389000-73404000	Weak transcription	Ovary	ovary
6	chr15:73390000-73400800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:73392000-73400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:73392400-73397600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:73392400-73397600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:73392400-73400800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:73392600-73398000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:73393000-73395200	Weak transcription	Psoas Muscle	Psoas
13	chr15:73393200-73422400	Weak transcription	Aorta	Aorta
14	chr15:73394000-73395200	Weak transcription	Fetal Intestine Large	intestine
15	chr15:73394000-73395600	Weak transcription	Fetal Intestine Small	intestine
16	chr15:73394000-73400200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:73394000-73403400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:73394200-73397200	Weak transcription	HepG2	liver
19	chr15:73394200-73414800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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