Variant report

Variant	rs7180017
Chromosome Location	chr15:73364240-73364241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73361985..73364590-chr15:73365433..73367284,2	K562	blood:
2	chr15:73361829..73364780-chr17:57931295..57933567,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1017809	1.00[GIH][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1029	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1038136	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11852881	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11853109	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11856383	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856433	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856466	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11857053	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101540	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13329282	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1382780	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1678245	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16957661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1714529	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1714530	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1714532	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1812363	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1842164	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1895842	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1963253	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1963254	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1979410	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2169952	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254390	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2254818	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2623990	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2623994	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2623996	0.88[EUR][1000 genomes]
rs2680347	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2680348	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2680350	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2680351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28547177	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28572029	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28582318	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28645758	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28676873	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28808999	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28828370	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238459	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4287530	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4325518	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4539561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4635304	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776626	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777584	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969660	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57453823	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495054	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176908	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73438015	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7403367	1.00[CEU][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7497831	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031718	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034243	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8034826	0.95[AFR][1000 genomes]
rs8035499	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8035717	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8038411	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs899480	1.00[GIH][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920152	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920459	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920675	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:73352000-73365000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:73353800-73366000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:73353800-73367400	Weak transcription	Fetal Intestine Small	intestine
5	chr15:73354400-73364800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:73355200-73365200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:73355600-73365800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:73358000-73367000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:73359200-73366000	Weak transcription	Fetal Brain Male	brain
10	chr15:73359200-73370600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:73359600-73365400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:73359600-73367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:73359800-73365600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:73360400-73365000	Weak transcription	Brain Angular Gyrus	brain
15	chr15:73361000-73372400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:73361400-73366200	Weak transcription	Brain Anterior Caudate	brain
17	chr15:73363400-73370200	Weak transcription	Ovary	ovary
18	chr15:73363800-73364800	Weak transcription	Brain Substantia Nigra	brain
19	chr15:73363800-73365000	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:73364200-73367000	Weak transcription	Aorta	Aorta

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