Variant report

Variant	rs4325518
Chromosome Location	chr15:73386466-73386467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73379658..73381807-chr15:73385604..73388126,2	MCF-7	breast:
2	chr15:73064606..73067353-chr15:73384208..73386751,2	MCF-7	breast:
3	chr15:73354673..73357162-chr15:73385242..73388078,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1017809	1.00[GIH][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1029	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1038136	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11852881	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11853109	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11856383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856433	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856466	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11857053	1.00[CEU][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101540	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101734	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13329282	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1382780	0.88[EUR][1000 genomes]
rs1648248	0.82[EUR][1000 genomes]
rs1678245	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16957661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1714529	0.88[EUR][1000 genomes]
rs1714530	0.88[EUR][1000 genomes]
rs1714532	0.88[EUR][1000 genomes]
rs1812363	0.88[EUR][1000 genomes]
rs1842164	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1895842	1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs1963253	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1963254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1979410	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2169952	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254390	0.85[EUR][1000 genomes]
rs2254818	0.85[EUR][1000 genomes]
rs2623990	0.85[EUR][1000 genomes]
rs2623994	0.82[EUR][1000 genomes]
rs2623996	0.88[EUR][1000 genomes]
rs2624002	0.82[EUR][1000 genomes]
rs2660823	0.82[EUR][1000 genomes]
rs2680347	0.88[EUR][1000 genomes]
rs2680348	0.82[EUR][1000 genomes]
rs2680350	0.82[EUR][1000 genomes]
rs2680351	0.88[EUR][1000 genomes]
rs28547177	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28572029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28582318	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28645758	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28676873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28808999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28828370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238459	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4287530	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4539561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4635304	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777584	1.00[CEU][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490567	0.82[EUR][1000 genomes]
rs533460	0.82[EUR][1000 genomes]
rs55969660	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57453823	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs576414	0.82[EUR][1000 genomes]
rs6495054	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176908	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7180017	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438015	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7403367	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7497831	1.00[CEU][hapmap];0.90[TSI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031718	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034243	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8034826	0.96[AFR][1000 genomes]
rs8035499	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8035717	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8038411	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs899480	1.00[GIH][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920152	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920459	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920675	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73371200-73388600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:73371200-73397000	Weak transcription	Pancreas	Pancrea
3	chr15:73371600-73393800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:73374200-73393600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:73375600-73391200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:73379600-73388600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:73380200-73388800	Weak transcription	Fetal Intestine Large	intestine
8	chr15:73380400-73388600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:73383400-73392400	Weak transcription	Psoas Muscle	Psoas
10	chr15:73384400-73387200	Weak transcription	Gastric	stomach
11	chr15:73384600-73409200	Weak transcription	Fetal Lung	lung
12	chr15:73385600-73388200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:73386400-73386800	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links