Variant report

Variant	rs515944
Chromosome Location	chr1:67219980-67219981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1032634	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032635	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749763	0.92[CEU][hapmap]
rs10749765	0.95[CEU][hapmap]
rs10789210	0.95[CEU][hapmap]
rs10789214	0.95[CEU][hapmap]
rs10789215	0.95[CEU][hapmap]
rs10889634	0.91[CEU][hapmap]
rs10889635	0.91[CEU][hapmap]
rs10889641	0.90[CEU][hapmap]
rs10889642	0.96[CEU][hapmap]
rs10889643	0.96[CEU][hapmap]
rs10889644	0.95[CEU][hapmap]
rs11810644	1.00[CHB][hapmap]
rs12070427	1.00[CHB][hapmap]
rs1280280	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1280310	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1280313	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1325261	0.89[CEU][hapmap]
rs1325263	0.92[CEU][hapmap]
rs1536115	0.92[CEU][hapmap]
rs1562217	0.91[CEU][hapmap]
rs17129327	1.00[CHB][hapmap]
rs17129329	1.00[CHB][hapmap]
rs17129365	1.00[CHB][hapmap]
rs17440989	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17492182	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1856318	0.92[CEU][hapmap]
rs2025595	0.96[CEU][hapmap]
rs2031478	0.92[CEU][hapmap]
rs2146904	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2147777	0.92[CEU][hapmap]
rs2483704	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2483705	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2872078	0.92[CEU][hapmap]
rs2916	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655506	0.95[CEU][hapmap]
rs4655636	0.88[CEU][hapmap]
rs4655647	0.92[CEU][hapmap]
rs4655648	0.91[CEU][hapmap]
rs4655650	0.95[CEU][hapmap]
rs481681	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485543	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492109	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs499263	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs502690	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523132	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523188	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523956	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs524114	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs532564	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs536410	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs536527	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539014	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544258	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602513	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs603750	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs618093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs628655	0.95[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588207	0.91[CEU][hapmap]
rs6588215	0.95[CEU][hapmap]
rs659291	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs665319	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6656912	0.91[CEU][hapmap]
rs6659968	0.92[CEU][hapmap]
rs6668603	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6669023	0.82[AMR][1000 genomes]
rs6670378	0.91[CEU][hapmap]
rs6680876	0.92[CEU][hapmap]
rs6680944	0.92[CEU][hapmap]
rs6681460	0.91[CEU][hapmap]
rs6689864	0.92[CEU][hapmap]
rs6696927	0.91[CEU][hapmap]
rs6697088	0.91[CEU][hapmap]
rs672230	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs688630	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs693272	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669501	1.00[ASN][1000 genomes]
rs72671621	1.00[ASN][1000 genomes]
rs72922021	1.00[ASN][1000 genomes]
rs7515848	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7519747	0.95[CEU][hapmap]
rs7521111	0.86[CEU][hapmap]
rs7521123	0.91[CEU][hapmap]
rs7524818	0.92[CEU][hapmap]
rs7542924	0.95[CEU][hapmap]
rs7554101	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9662943	0.91[CEU][hapmap]
rs9662962	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67217200-67220400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:67217200-67220800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:67218800-67223400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:67219000-67220800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:67219000-67222800	Weak transcription	Pancreas	Pancrea
6	chr1:67219000-67223400	Weak transcription	Brain Substantia Nigra	brain
7	chr1:67219000-67223400	Weak transcription	Fetal Heart	heart
8	chr1:67219000-67223600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:67219000-67223800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:67219000-67224000	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:67219000-67224000	Weak transcription	Right Atrium	heart
12	chr1:67219000-67227200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:67219200-67220800	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:67219200-67221200	Weak transcription	Liver	Liver
15	chr1:67219600-67222400	Weak transcription	Left Ventricle	heart
16	chr1:67219800-67223200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links