Variant report

Variant	rs527483392
Chromosome Location	chr6:64972436-64972437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1033519	chr6:64843989-65017528	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024558	chr6:64876263-65000031	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv885993	chr6:64885858-65050050	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv885995	chr6:64914258-65050050	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv885996	chr6:64914258-65081343	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv885997	chr6:64920494-64998321	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv603389	chr6:64946169-64980900	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv885999	chr6:64946169-65227097	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886000	chr6:64955968-65081343	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv462968	chr6:64971436-65018685	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv462969	chr6:64971436-65018685	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv603390	chr6:64971436-65018685	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv462970	chr6:64971436-65198215	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv603391	chr6:64971436-65198215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64970000-64972600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:64970000-64974000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:64970200-64972600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:64970200-64972600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:64970400-64972600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:64970400-64972800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:64971000-64973400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:64972200-64972800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:64972400-64972800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:64972400-64972800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:64972400-64972800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:64972400-64972800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:64972400-64972800	Active TSS	Fetal Lung	lung
14	chr6:64972400-64972800	Active TSS	HUVEC	blood vessel
15	chr6:64972400-64972800	Active TSS	NHEK	skin
16	chr6:64972400-64973000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:64972400-64973000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:64972400-64973000	Enhancers	Stomach Mucosa	stomach
19	chr6:64972400-64973200	Active TSS	GM12878-XiMat	blood
20	chr6:64972400-64973800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:64972400-64974400	Enhancers	HUES48 Cell Line	embryonic stem cell

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