Variant report

Variant	rs528246095
Chromosome Location	chr13:96923298-96923299
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
9	nsv976262	chr13:96918599-96924766	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3515251	chr13:96919651-96926085	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3515240	chr13:96919697-96926062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3515229	chr13:96919723-96926006	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3443151	chr13:96919777-96925959	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3515262	chr13:96919792-96925955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv10256	chr13:96919835-96926010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv2760278	chr13:96920844-96924615	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv519951	chr13:96922191-96923515	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96921800-96925200	Enhancers	Fetal Intestine Large	intestine
2	chr13:96922200-96924800	Enhancers	Fetal Intestine Small	intestine
3	chr13:96922600-96926600	Weak transcription	Pancreas	Pancrea
4	chr13:96922800-96924000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:96923000-96923400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr13:96923000-96923400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:96923000-96923400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:96923000-96923400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:96923000-96924000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:96923200-96923400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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