Variant report

Variant	rs531400410
Chromosome Location	chr11:55110562-55110563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55110562-55110612	HAEpiC	amniotic membrane:	n/a
2	chr11:55110562-55110612	GM19239	blood:	n/a
3	chr11:55110562-55110612	PFSK-1	brain:	n/a
4	chr11:55110562-55110612	U87	brain:	n/a
5	chr11:55110562-55110612	MCF10A-Er-Src	breast:	n/a
6	chr11:55110562-55110612	AG09319	gingival:	n/a
7	chr11:55110562-55110612	AG04450	lung:	fetal
8	chr11:55110562-55110612	NH-A	brain:	n/a
9	chr11:55110562-55110612	GM12878	blood:	n/a
10	chr11:55110562-55110612	Hepatocyte	liver:	n/a
11	chr11:55110562-55110612	SK-N-SH	brain:	n/a
12	chr11:55110562-55110612	A549	lung:	n/a
13	chr11:55110562-55110612	AG10803	skin:	n/a
14	chr11:55110562-55110612	HCT-116	colon:	n/a
15	chr11:55110562-55110612	Hela-S3	cervix:	n/a
16	chr11:55110562-55110612	BE2_C	brain:	n/a
17	chr11:55110562-55110612	T-47D	breast:	n/a
18	chr11:55110562-55110612	ProgFib	skin:	n/a
19	chr11:55110562-55110612	Caco-2	colon:	n/a
20	chr11:55110562-55110612	SK-N-SH_RA	brain:	n/a
21	chr11:55110562-55110612	ovcar-3	ovarian:	n/a
22	chr11:55110562-55110612	Jurkat	blood:	n/a
23	chr11:55110562-55110612	AG09309	skin:	n/a
24	chr11:55110562-55110612	GM12891	blood:	n/a
25	chr11:55110562-55110612	AoSMC	blood vessel:	n/a
26	chr11:55110562-55110612	HEK293	kidney:	embryo
27	chr11:55110562-55110612	NB4	blood:	n/a
28	chr11:55110562-55110612	LNCaP	prostate:	n/a
29	chr11:55110562-55110612	GM12892	blood:	n/a
30	chr11:55110562-55110612	SK-N-MC	brain:	n/a
31	chr11:55110562-55110612	SKMC	muscle:	n/a
32	chr11:55110562-55110612	HEEpiC	esophagus:	n/a
33	chr11:55110562-55110612	ECC-1	luminal epithelium:	n/a
34	chr11:55110562-55110612	CMK	blood:	n/a
35	chr11:55110562-55110612	GM06990	blood:	n/a
36	chr11:55110562-55110612	BJ	skin:	n/a
37	chr11:55110562-55110612	HUVEC	blood vessel:	n/a
38	chr11:55110562-55110612	HRPEpiC	eye:	n/a
39	chr11:55110562-55110612	RPTEC	kidney:	n/a
40	chr11:55110562-55110612	HCF	heart:	n/a
41	chr11:55110562-55110612	PrEC	prostate:	n/a
42	chr11:55110562-55110612	K562	blood:	n/a
43	chr11:55110562-55110612	HRCEpiC	kidney:	n/a
44	chr11:55110562-55110612	NHBE	bronchial:	n/a
45	chr11:55110562-55110612	SAEC	small airway:	n/a
46	chr11:55110562-55110612	HIPEpiC	eye:	n/a
47	chr11:55110562-55110612	NHDF-neo	bronchial:	n/a
48	chr11:55110562-55110612	NT2-D1	testis:	n/a
49	chr11:55110562-55110612	HPAEpiC	pulmonary alveolar:	n/a
50	chr11:55110562-55110612	HCPEpiC	choroid plexus:	n/a

No data

Variant related genes	Relation type
OR4A16	CpG island

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554618	chr11:54695707-55111584	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1048402	chr11:54720811-55148163	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1039155	chr11:54720811-55156607	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1042875	chr11:54720811-55191418	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1038336	chr11:54720811-55213281	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv1054262	chr11:55030215-55146638	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
13	nsv1042158	chr11:55045843-55121390	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1054854	chr11:55045843-55121706	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1047317	chr11:55045843-55132783	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	esv2760193	chr11:55045855-55121706	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1042642	chr11:55050890-55121706	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1050431	chr11:55065048-55148163	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv832153	chr11:55068335-55242831	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	nsv1053286	chr11:55069566-55126589	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1051199	chr11:55074969-55261905	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
22	nsv975110	chr11:55076487-55318108	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
23	nsv522655	chr11:55083434-55156434	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv528911	chr11:55083434-55156434	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
25	nsv554798	chr11:55083434-55156434	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
26	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
27	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
28	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
29	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
30	esv3387641	chr11:55084684-55196590	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
31	esv3328290	chr11:55084699-55196666	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
32	esv3342341	chr11:55084713-55196631	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
33	esv998925	chr11:55084765-55196478	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
34	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
35	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
36	nsv825891	chr11:55092866-55148407	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
37	nsv976455	chr11:55108724-55160430	ZNF genes & repeats Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
38	nsv983184	chr11:55109631-55147264	Enhancers ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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