Variant report

Variant	rs533392108
Chromosome Location	chr6:2109446-2109447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:2107952..2110679-chr6:2111605..2113236,2	MCF-7	breast:
2	chr6:2102993..2105699-chr6:2107973..2110016,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv883386	chr6:1910108-2122454	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522608	chr6:2032259-2203888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1019227	chr6:2038843-2142395	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv538097	chr6:2038843-2142395	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1025814	chr6:2064629-2308518	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv538098	chr6:2064629-2308518	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
10	nsv1030181	chr6:2071210-2308657	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
11	nsv538099	chr6:2071210-2308657	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
12	nsv883387	chr6:2086679-2176239	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
14	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
15	nsv519587	chr6:2097654-2145447	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv969343	chr6:2108400-2134218	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2065000-2117400	Weak transcription	Pancreas	Pancrea
2	chr6:2081200-2113000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:2081600-2131800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:2088800-2112200	Weak transcription	Small Intestine	intestine
5	chr6:2104400-2132000	Weak transcription	Fetal Intestine Large	intestine
6	chr6:2104600-2110000	Weak transcription	Osteobl	bone
7	chr6:2104600-2110800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:2104600-2111000	Weak transcription	Hela-S3	cervix
9	chr6:2104600-2111200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:2104600-2111200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:2104600-2111200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:2104600-2112000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:2104600-2116600	Weak transcription	Dnd41	blood
14	chr6:2104600-2128200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:2104800-2110200	Weak transcription	HUVEC	blood vessel
16	chr6:2104800-2112200	Weak transcription	Left Ventricle	heart
17	chr6:2105200-2123400	Weak transcription	Gastric	stomach
18	chr6:2107400-2116800	Weak transcription	Colonic Mucosa	Colon
19	chr6:2107800-2111800	Weak transcription	Fetal Stomach	stomach
20	chr6:2108000-2110600	Weak transcription	GM12878-XiMat	blood
21	chr6:2108000-2111600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:2108000-2126400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:2108200-2110400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:2108200-2113000	Weak transcription	Esophagus	oesophagus
25	chr6:2108400-2110800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:2108600-2109800	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:2108600-2110600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:2108800-2109600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr6:2108800-2110200	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:2108800-2110800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:2108800-2118600	Strong transcription	HepG2	liver
32	chr6:2109000-2109600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:2109000-2109600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:2109000-2110000	Strong transcription	Primary T cells from cord blood	blood
35	chr6:2109000-2110600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:2109200-2109600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:2109200-2110200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:2109400-2110400	Weak transcription	Lung	lung
39	chr6:2109400-2110800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links