Variant report

Variant	rs537423061
Chromosome Location	chr19:21580634-21580635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1793996	chr19:21544242-21609607	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1801985	chr19:21544242-21609607	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1844586	chr19:21544242-21609607	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1834499	chr19:21557835-21609607	Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv1834993	chr19:21557835-21609607	Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv911421	chr19:21579718-21613397	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
15	nsv978789	chr19:21579953-21589286	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21578800-21581200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:21579000-21581600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:21579200-21580800	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr19:21579200-21580800	Active TSS	Stomach Smooth Muscle	stomach
5	chr19:21579400-21580800	Active TSS	Primary T cells from cord blood	blood
6	chr19:21579400-21580800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr19:21579400-21580800	Active TSS	Fetal Brain Female	brain
8	chr19:21579400-21581200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr19:21579400-21581400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:21579600-21580800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:21579600-21580800	Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr19:21579600-21580800	Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr19:21579600-21580800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr19:21579600-21580800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:21579600-21580800	Active TSS	Muscle Satellite Cultured Cells	--
16	chr19:21579600-21580800	Active TSS	Brain Anterior Caudate	brain
17	chr19:21579600-21580800	Active TSS	Fetal Brain Male	brain
18	chr19:21579600-21580800	Active TSS	Fetal Lung	lung
19	chr19:21579600-21580800	Active TSS	Fetal Muscle Leg	muscle
20	chr19:21579600-21580800	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr19:21579600-21580800	Active TSS	Rectal Smooth Muscle	rectum
22	chr19:21579600-21580800	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr19:21579600-21580800	Active TSS	Thymus	Thymus
24	chr19:21579600-21580800	Active TSS	NHEK	skin
25	chr19:21579600-21581000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:21579600-21581000	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr19:21579600-21581000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:21579600-21581000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:21579600-21581000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr19:21579600-21581000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr19:21579600-21581000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:21579600-21581000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:21579600-21581000	Active TSS	Aorta	Aorta
34	chr19:21579600-21581000	Active TSS	Brain Cingulate Gyrus	brain
35	chr19:21579600-21581000	Active TSS	Brain Hippocampus Middle	brain
36	chr19:21579600-21581000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:21579600-21581000	Active TSS	Brain Substantia Nigra	brain
38	chr19:21579600-21581000	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr19:21579600-21581000	Active TSS	Fetal Intestine Large	intestine
40	chr19:21579600-21581000	Active TSS	Fetal Muscle Trunk	muscle
41	chr19:21579600-21581000	Active TSS	HSMM	muscle
42	chr19:21579600-21581000	Active TSS	NH-A	brain
43	chr19:21579600-21581000	Active TSS	NHDF-Ad	bronchial
44	chr19:21579600-21581200	Active TSS	Brain Angular Gyrus	brain
45	chr19:21579600-21581200	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr19:21579600-21581200	Active TSS	Fetal Kidney	kidney
47	chr19:21579600-21581200	Active TSS	Ovary	ovary
48	chr19:21579600-21581400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:21579600-21581400	Active TSS	Colonic Mucosa	Colon
50	chr19:21579600-21581400	Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links