Variant report

Variant	rs538956
Chromosome Location	chr11:75342852-75342853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75342326..75343834-chr11:75523597..75526586,2	MCF-7	breast:
2	chr11:75340982..75343512-chr11:75355129..75357190,2	K562	blood:

Variant related genes	Relation type
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10751245	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12225010	0.81[AMR][1000 genomes]
rs2509615	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs516573	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs530260	0.86[ASN][1000 genomes]
rs540461	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs590611	0.86[ASN][1000 genomes]
rs599783	0.83[EUR][1000 genomes]
rs629238	0.85[EUR][1000 genomes]
rs640703	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs646989	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs655036	0.92[CEU][hapmap]
rs658601	0.88[CEU][hapmap]
rs668581	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs670923	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs677283	0.85[EUR][1000 genomes]
rs7103237	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs75954	0.92[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75326800-75343600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75330000-75350800	Weak transcription	Lung	lung
5	chr11:75330200-75356200	Weak transcription	Aorta	Aorta
6	chr11:75335400-75343000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:75335400-75346800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:75336000-75343200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:75338000-75344000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:75338000-75346000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:75338600-75343400	Weak transcription	Fetal Brain Female	brain
12	chr11:75338800-75346400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:75339000-75344800	Weak transcription	Fetal Heart	heart
14	chr11:75339000-75350400	Weak transcription	Brain Angular Gyrus	brain
15	chr11:75339200-75346400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:75339200-75346600	Weak transcription	Spleen	Spleen
17	chr11:75339400-75346200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:75339600-75344200	Weak transcription	Fetal Stomach	stomach
19	chr11:75339600-75344600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:75339600-75345600	Weak transcription	Ovary	ovary
21	chr11:75339800-75343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:75339800-75344800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:75339800-75344800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:75340000-75344400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:75340000-75344400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:75340000-75344400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:75340000-75344600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:75340000-75344600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:75340000-75352600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:75341000-75343600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:75341200-75344800	Weak transcription	Fetal Lung	lung
32	chr11:75341200-75345600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:75341400-75348200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:75342000-75343800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:75342200-75349800	Enhancers	Fetal Brain Male	brain
36	chr11:75342400-75343000	Enhancers	HSMMtube	muscle
37	chr11:75342600-75343000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:75342600-75346000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:75342800-75346200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:75342800-75347200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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