Variant report

Variant	rs670923
Chromosome Location	chr11:75384904-75384905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10751245	0.87[ASN][1000 genomes]
rs12225010	0.86[AMR][1000 genomes]
rs2509615	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs516573	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs530260	0.87[ASN][1000 genomes]
rs538956	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs540461	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs590611	0.87[ASN][1000 genomes]
rs646989	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs668581	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7103237	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75384800-75385000	Active TSS	Hela-S3	cervix
2	chr11:75384800-75385000	Bivalent Enhancer	HUVEC	blood vessel
3	chr11:75384800-75385200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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