Variant report

Variant	rs7103237
Chromosome Location	chr11:75417722-75417723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75417003..75417960-chr11:75478722..75480062,9	MCF-7	breast:
2	chr11:75156405..75156952-chr11:75417206..75417726,2	K562	blood:
3	chr11:75297859..75300646-chr11:75417581..75420277,2	K562	blood:
4	chr11:75415113..75417792-chr11:75424221..75425813,2	MCF-7	breast:
5	chr11:75417138..75417827-chr11:75514337..75514943,2	MCF-7	breast:
6	chr11:75416234..75418863-chr11:75478065..75480151,2	MCF-7	breast:
7	chr11:75415903..75418586-chr11:75524285..75525879,2	MCF-7	breast:
8	chr11:75308811..75309383-chr11:75417094..75418075,3	MCF-7	breast:
9	chr11:75417249..75417751-chr11:75578528..75579417,2	MCF-7	breast:
10	chr11:75273492..75275162-chr11:75415663..75418287,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000247867	Chromatin interaction
ENSG00000255507	Chromatin interaction
ENSG00000254814	Chromatin interaction
ENSG00000149257	Chromatin interaction
ENSG00000062282	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10751245	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899101	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11236498	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17245228	0.92[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509615	0.83[ASN][1000 genomes]
rs530260	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs538956	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs540461	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs590611	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs646989	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670923	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv983044	chr11:75415170-75418558	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75416600-75417800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:75416600-75417800	Enhancers	NHEK	skin
3	chr11:75416800-75417800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:75416800-75417800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:75416800-75417800	Enhancers	Stomach Mucosa	stomach
6	chr11:75416800-75417800	Enhancers	HMEC	breast
7	chr11:75416800-75417800	Enhancers	K562	blood
8	chr11:75416800-75418400	Enhancers	Fetal Stomach	stomach
9	chr11:75417000-75417800	Enhancers	Fetal Intestine Large	intestine
10	chr11:75417200-75417800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:75417200-75417800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:75417200-75417800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:75417200-75417800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:75417200-75417800	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:75417200-75417800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr11:75417200-75417800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:75417200-75417800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr11:75417200-75417800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:75417200-75417800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:75417200-75417800	Enhancers	Adipose Nuclei	Adipose
21	chr11:75417200-75417800	Enhancers	Liver	Liver
22	chr11:75417200-75417800	Active TSS	Brain Angular Gyrus	brain
23	chr11:75417200-75417800	Active TSS	Brain Anterior Caudate	brain
24	chr11:75417200-75417800	Active TSS	Brain Cingulate Gyrus	brain
25	chr11:75417200-75417800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:75417200-75417800	Enhancers	Brain Substantia Nigra	brain
27	chr11:75417200-75417800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr11:75417200-75417800	Enhancers	Esophagus	oesophagus
29	chr11:75417200-75417800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr11:75417200-75417800	Enhancers	Fetal Intestine Small	intestine
31	chr11:75417200-75417800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr11:75417200-75417800	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr11:75417200-75417800	Enhancers	Pancreas	Pancrea
34	chr11:75417200-75417800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:75417200-75417800	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:75417200-75417800	Enhancers	Dnd41	blood
37	chr11:75417200-75417800	Enhancers	GM12878-XiMat	blood
38	chr11:75417200-75417800	Flanking Active TSS	HepG2	liver
39	chr11:75417200-75417800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr11:75417200-75418400	Enhancers	Fetal Heart	heart
41	chr11:75417200-75418400	Enhancers	Rectal Smooth Muscle	rectum
42	chr11:75417400-75417800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:75417400-75417800	Enhancers	Placenta	Placenta
44	chr11:75417400-75417800	Enhancers	Gastric	stomach
45	chr11:75417400-75417800	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr11:75417400-75417800	Enhancers	Spleen	Spleen
47	chr11:75417400-75417800	Active TSS	NHLF	lung
48	chr11:75417400-75418000	Enhancers	Stomach Smooth Muscle	stomach
49	chr11:75417400-75419200	Weak transcription	Right Atrium	heart
50	chr11:75417600-75417800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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