Variant report

Variant	rs646989
Chromosome Location	chr11:75400236-75400237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10751245	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17245228	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2509615	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs516573	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs530260	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538956	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs540461	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590611	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs668581	0.85[EUR][1000 genomes]
rs670923	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7103237	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75399200-75402400	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:75400000-75401000	Enhancers	K562	blood
3	chr11:75400200-75401000	Flanking Active TSS	GM12878-XiMat	blood
4	chr11:75400200-75401800	Enhancers	Primary B cells from cord blood	blood
5	chr11:75400200-75401800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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