Variant report

Variant	rs543410
Chromosome Location	chr12:57825370-57825371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:62)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:62 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:57823603-57825744	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr12:57823421-57825630	A549	lung:	n/a	chr12:57823713-57823721 chr12:57823710-57823720 chr12:57824528-57824537
3	POLR2A	chr12:57824237-57825548	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr12:57824751-57825372	K562	blood:	n/a	n/a
5	TBP	chr12:57824632-57825388	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr12:57824553-57825533	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr12:57823478-57825510	HL-60	blood:	n/a	n/a
8	POLR2A	chr12:57824719-57825413	GM12892	blood:	n/a	n/a
9	POLR2A	chr12:57824677-57825381	GM12878	blood:	n/a	n/a
10	POLR2A	chr12:57824523-57825458	U87	brain:	n/a	n/a
11	POLR2A	chr12:57824686-57825466	U87	brain:	n/a	n/a
12	MAX	chr12:57823367-57825494	A549	lung:	n/a	chr12:57823713-57823721 chr12:57823710-57823720 chr12:57824528-57824537
13	NFATC1	chr12:57824656-57825377	GM12878	blood:	n/a	n/a
14	TEAD4	chr12:57824631-57825388	K562	blood:	n/a	n/a
15	POLR2A	chr12:57823859-57825448	Hela-S3	cervix:	n/a	n/a
16	E2F4	chr12:57824704-57825422	MCF10A-Er-Src	breast:	n/a	chr12:57824880-57824891
17	PML	chr12:57824676-57825478	K562	blood:	n/a	n/a
18	MXI1	chr12:57823020-57825888	SK-N-SH	brain:	n/a	chr12:57823711-57823720
19	MXI1	chr12:57823564-57825385	IMR90	lung:	n/a	chr12:57823711-57823720
20	BACH1	chr12:57824957-57825465	K562	blood:	n/a	n/a
21	POLR2A	chr12:57823651-57825451	HepG2	liver:	n/a	n/a
22	JUND	chr12:57825315-57825462	HepG2	liver:	n/a	n/a
23	POLR2A	chr12:57824021-57825702	HCT-116	colon:	n/a	n/a
24	MTA3	chr12:57824584-57825876	GM12878	blood:	n/a	n/a
25	POLR2A	chr12:57823523-57825405	K562	blood:	n/a	n/a
26	POLR2A	chr12:57824686-57825473	U87	brain:	n/a	n/a
27	POLR2A	chr12:57824515-57825622	SK-N-MC	brain:	n/a	n/a
28	HCFC1	chr12:57823353-57825885	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr12:57824543-57825512	PANC-1	pancreas:	n/a	n/a
30	POLR2A	chr12:57823645-57825413	GM12878	blood:	n/a	n/a
31	REST	chr12:57824413-57825456	H1-neurons	neurons:	n/a	n/a
32	POLR2A	chr12:57823846-57825412	Raji	blood:	n/a	n/a
33	POLR2A	chr12:57823612-57825405	HUVEC	blood vessel:	n/a	n/a
34	CREB1	chr12:57824507-57825438	K562	blood:	n/a	n/a
35	POLR2A	chr12:57823563-57825675	MCF10A-Er-Src	breast:	n/a	n/a
36	PML	chr12:57824519-57825478	GM12878	blood:	n/a	n/a
37	POLR2A	chr12:57823703-57825380	GM12892	blood:	n/a	n/a
38	MTA3	chr12:57824651-57825527	GM12878	blood:	n/a	n/a
39	CUX1	chr12:57824844-57825576	K562	blood:	n/a	chr12:57825094-57825108 chr12:57825384-57825393
40	POLR2A	chr12:57824699-57825419	HepG2	liver:	n/a	n/a
41	POLR2A	chr12:57824323-57825716	GM12878	blood:	n/a	n/a
42	POLR2A	chr12:57823612-57825441	IMR90	lung:	n/a	n/a
43	ELF1	chr12:57824563-57825419	A549	lung:	n/a	chr12:57824980-57824991
44	IRF1	chr12:57824682-57825690	K562	blood:	n/a	n/a
45	POLR2A	chr12:57824105-57825931	ECC-1	luminal epithelium:	n/a	n/a
46	MAX	chr12:57824563-57825452	ECC-1	luminal epithelium:	n/a	n/a
47	POLR2A	chr12:57824446-57825487	PFSK-1	brain:	n/a	n/a
48	POLR2A	chr12:57823616-57825687	GM12891	blood:	n/a	n/a
49	POLR2A	chr12:57824529-57825452	U87	brain:	n/a	n/a
50	RFX5	chr12:57825096-57825688	K562	blood:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57820715..57827591-chr12:57847165..57857509,18	K562	blood:
2	chr12:57824494..57826362-chr12:57997412..57999477,2	K562	blood:
3	chr12:57675498..57678307-chr12:57822743..57825602,2	MCF-7	breast:
4	chr12:57824670..57825470-chr3:186524136..186524729,2	Hela-S3	cervix:
5	chr12:57823258..57825830-chr12:58164419..58166506,2	MCF-7	breast:
6	chr12:57822828..57827240-chr12:57828141..57836129,12	MCF-7	breast:
7	chr12:57821945..57826454-chr12:57843844..57847049,4	K562	blood:
8	chr12:57822673..57825673-chr12:57914537..57916745,4	K562	blood:
9	chr12:57822102..57825804-chr12:57846903..57851131,6	MCF-7	breast:
10	chr12:57822750..57826133-chr12:57852904..57855936,4	K562	blood:
11	chr12:57824473..57826346-chr12:57880233..57882392,2	MCF-7	breast:
12	chr12:57825005..57827571-chr12:57912550..57914471,2	K562	blood:
13	chr12:26985318..26986140-chr12:57825004..57825517,2	Hela-S3	cervix:
14	chr12:57522726..57524274-chr12:57824100..57825642,2	MCF-7	breast:
15	chr12:57821945..57831494-chr12:57839441..57852842,32	K562	blood:
16	chr12:57734197..57736239-chr12:57824447..57826782,2	K562	blood:

No data

Variant related genes	Relation type
INHBC	TF binding region
R3HDM2	TF binding region
ENSG00000208028	Chromatin interaction
ENSG00000123427	Chromatin interaction
ENSG00000037897	Chromatin interaction
ENSG00000175189	Chromatin interaction
ENSG00000178498	Chromatin interaction
ENSG00000175197	Chromatin interaction
ENSG00000163918	Chromatin interaction
ENSG00000166986	Chromatin interaction
ENSG00000166987	Chromatin interaction
ENSG00000111087	Chromatin interaction
ENSG00000123104	Chromatin interaction
ENSG00000139269	Chromatin interaction
ENSG00000179912	Chromatin interaction
ENSG00000166888	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10747777	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10747778	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs10783818	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs10783819	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10783823	0.80[ASN][1000 genomes]
rs10876976	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs10876977	0.83[EUR][1000 genomes]
rs10876978	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876980	0.83[EUR][1000 genomes]
rs10876981	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876983	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11172156	0.96[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs11172169	0.89[CEU][hapmap]
rs11172170	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11172190	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11172191	0.83[EUR][1000 genomes]
rs11172205	0.86[EUR][1000 genomes]
rs11172211	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11172214	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11172222	0.88[EUR][1000 genomes]
rs11609986	0.81[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap]
rs12230111	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12296766	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs12310220	0.93[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap]
rs12423654	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12579911	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12812140	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs1284252	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1798710	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2063778	0.96[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs2280139	0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28504983	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3923885	0.87[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap]
rs4075325	0.87[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap]
rs4108243	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4760228	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4760236	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4760244	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4760305	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4760306	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4760308	1.00[CEU][hapmap]
rs4760348	1.00[CEU][hapmap]
rs481196	0.81[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs491750	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs492749	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs512223	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs533975	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537482	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs560048	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs575153	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6581131	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs6581134	1.00[ASW][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap]
rs6581136	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6581139	0.81[ASN][1000 genomes]
rs7132367	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7133939	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7135142	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap]
rs7298418	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap]
rs7303070	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7307059	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs7309659	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7398058	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7486863	0.96[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs7977908	1.00[CEU][hapmap]
rs7980310	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9738004	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046013	chr12:57714676-57895167	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv541502	chr12:57714676-57895167	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv899117	chr12:57811414-57926472	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv899118	chr12:57811414-57946477	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	esv3446927	chr12:57823485-57825733	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs543410	SP7	cis	parietal	SCAN
rs543410	KRT81	cis	cerebellum	SCAN
rs543410	KIF5A	cis	cerebellum	SCAN
rs543410	TSPAN31	cis	cerebellum	SCAN
rs543410	KIAA0748	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57823200-57825600	Active TSS	HMEC	breast
2	chr12:57823400-57825400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr12:57823400-57825400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:57823400-57825400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:57823400-57825400	Active TSS	NHLF	lung
6	chr12:57823400-57825600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:57823400-57825600	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr12:57823400-57825600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr12:57823600-57825400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:57823600-57825400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:57823600-57825400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:57823600-57825400	Active TSS	Aorta	Aorta
13	chr12:57823600-57825400	Active TSS	Brain Germinal Matrix	brain
14	chr12:57823600-57825400	Active TSS	Colonic Mucosa	Colon
15	chr12:57823600-57825400	Active TSS	Fetal Muscle Trunk	muscle
16	chr12:57823600-57825400	Active TSS	Left Ventricle	heart
17	chr12:57823600-57825400	Active TSS	Ovary	ovary
18	chr12:57823600-57825400	Active TSS	Placenta Amnion	Placenta Amnion
19	chr12:57823600-57825400	Active TSS	Psoas Muscle	Psoas
20	chr12:57823600-57825400	Active TSS	Right Ventricle	heart
21	chr12:57823600-57825400	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr12:57823800-57825400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:57823800-57825400	Active TSS	Placenta	Placenta
24	chr12:57823800-57825600	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr12:57823800-57825600	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr12:57824000-57825400	Active TSS	Brain Substantia Nigra	brain
27	chr12:57824000-57825600	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr12:57824000-57825600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:57824000-57825600	Active TSS	Brain Angular Gyrus	brain
30	chr12:57824000-57825600	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr12:57824200-57825400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr12:57824200-57826200	Active TSS	Liver	Liver
33	chr12:57824800-57825400	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr12:57824800-57825400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr12:57825000-57825400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr12:57825000-57825400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:57825000-57825400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:57825000-57825400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr12:57825000-57825400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr12:57825000-57825400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr12:57825000-57825400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr12:57825000-57825400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr12:57825000-57825400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr12:57825000-57825400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr12:57825000-57825400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr12:57825000-57825400	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr12:57825000-57825400	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr12:57825000-57825400	Flanking Active TSS	Fetal Brain Male	brain
49	chr12:57825000-57825400	Flanking Active TSS	Fetal Thymus	thymus
50	chr12:57825000-57825400	Active TSS	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links