Variant report

Variant	rs7298418
Chromosome Location	chr12:57697949-57697950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:57697149..57699749-chr12:57824239..57826425,3	MCF-7	breast:
2	chr12:57685804..57688349-chr12:57697239..57700057,2	K562	blood:
3	chr12:57691946..57694980-chr12:57695463..57699160,3	K562	blood:
4	chr12:57692883..57695255-chr12:57696474..57700036,3	K562	blood:
5	chr12:57683640..57687551-chr12:57695427..57698739,4	K562	blood:
6	chr12:57696649..57699351-chr12:57704431..57706467,2	K562	blood:

Variant related genes	Relation type
ENSG00000258001	Chromatin interaction
ENSG00000179912	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10747777	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747778	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10783818	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10783819	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783820	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783823	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10876976	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10876978	0.84[AMR][1000 genomes]
rs10876980	0.80[ASN][1000 genomes]
rs11172156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11172160	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11172165	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172169	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11172170	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172177	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11172190	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11609986	0.96[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs12296766	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12310220	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12579911	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs12812140	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1798710	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2063778	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs2280139	0.95[JPT][hapmap]
rs35032945	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3923885	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075325	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4760192	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4760193	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4760228	0.86[AMR][1000 genomes]
rs4760236	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs4760308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4760348	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4760356	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4760357	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs481196	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs491750	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs512223	0.86[AMR][1000 genomes]
rs533975	1.00[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs537482	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs543410	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap]
rs560048	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs568793	0.80[JPT][hapmap]
rs575153	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs6581131	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6581134	0.82[ASW][hapmap];0.85[CHB][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6581135	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6581136	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6581139	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7132367	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs7133366	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7133939	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7135142	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7307059	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7309659	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7313824	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7314266	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7358684	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7398058	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7486863	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7975649	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7977908	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7298418	SPRY2	trans	lymphoblastoid	seeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57670600-57698600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:57670600-57700000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr12:57671000-57700000	Strong transcription	Liver	Liver
7	chr12:57674600-57700000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:57674600-57702600	Weak transcription	HUVEC	blood vessel
9	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr12:57674800-57700000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:57674800-57701000	Strong transcription	Primary T cells from cord blood	blood
12	chr12:57675000-57698400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:57675000-57699400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:57675000-57700000	Strong transcription	Fetal Thymus	thymus
15	chr12:57675000-57701000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr12:57676200-57700000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr12:57676200-57700000	Strong transcription	Fetal Intestine Large	intestine
19	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
20	chr12:57678000-57699400	Weak transcription	A549	lung
21	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:57679200-57699800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr12:57680000-57698800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr12:57682400-57700200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr12:57682800-57698600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr12:57682800-57700200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr12:57684000-57699800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:57684200-57699000	Weak transcription	Fetal Brain Male	brain
29	chr12:57684600-57700200	Strong transcription	Primary B cells from cord blood	blood
30	chr12:57684800-57700000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr12:57685400-57700000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr12:57685400-57700400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr12:57689200-57701800	Weak transcription	Brain Substantia Nigra	brain
34	chr12:57689200-57703200	Weak transcription	Hela-S3	cervix
35	chr12:57689600-57703000	Weak transcription	HMEC	breast
36	chr12:57690200-57699400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:57690400-57703200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:57690800-57698000	Weak transcription	Esophagus	oesophagus
39	chr12:57690800-57702600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr12:57690800-57705400	Weak transcription	Spleen	Spleen
41	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
42	chr12:57692000-57703000	Weak transcription	NH-A	brain
43	chr12:57692200-57699200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr12:57692800-57698400	Strong transcription	Brain Anterior Caudate	brain
45	chr12:57693200-57705800	Weak transcription	K562	blood
46	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr12:57693800-57701600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr12:57693800-57702800	Weak transcription	NHLF	lung
49	chr12:57693800-57705200	Weak transcription	Small Intestine	intestine
50	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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