Variant report

Variant	rs4760192
Chromosome Location	chr12:57707800-57707801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10747777	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10747778	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10783818	0.87[EUR][1000 genomes]
rs10783819	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783820	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783823	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172156	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11172160	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11172165	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11172170	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11609986	0.82[EUR][1000 genomes]
rs12296766	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12310220	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3923885	0.82[EUR][1000 genomes]
rs4075325	0.86[EUR][1000 genomes]
rs4760193	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4760308	0.80[EUR][1000 genomes]
rs4760348	0.82[EUR][1000 genomes]
rs4760356	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4760357	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6581131	0.86[EUR][1000 genomes]
rs6581134	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6581135	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6581136	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6581139	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7133939	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7135142	0.89[EUR][1000 genomes]
rs7298418	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7307059	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7309659	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7313824	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7314266	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7358684	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7398058	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7486863	0.84[EUR][1000 genomes]
rs7975649	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7977908	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
2	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
4	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:57694000-57709400	Weak transcription	Colonic Mucosa	Colon
7	chr12:57694000-57710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:57694000-57713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:57694000-57713200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:57694000-57780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:57694200-57734000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:57694400-57732400	Weak transcription	Ovary	ovary
13	chr12:57694400-57735000	Weak transcription	Psoas Muscle	Psoas
14	chr12:57695200-57794600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr12:57696800-57715200	Weak transcription	Gastric	stomach
16	chr12:57697000-57726000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:57697000-57735400	Weak transcription	Right Ventricle	heart
18	chr12:57697200-57734000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:57697200-57745000	Weak transcription	Lung	lung
20	chr12:57697400-57713000	Weak transcription	Fetal Lung	lung
21	chr12:57697400-57721400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr12:57699800-57762400	Weak transcription	Left Ventricle	heart
23	chr12:57700000-57712600	Weak transcription	Fetal Muscle Leg	muscle
24	chr12:57700000-57717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr12:57700000-57719800	Weak transcription	Fetal Kidney	kidney
26	chr12:57700000-57720000	Weak transcription	Fetal Intestine Large	intestine
27	chr12:57700000-57733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:57700000-57736000	Weak transcription	Fetal Brain Male	brain
29	chr12:57700200-57709800	Weak transcription	Fetal Brain Female	brain
30	chr12:57700400-57721600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:57703200-57713000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr12:57703400-57733800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr12:57703400-57734600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:57703400-57742000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr12:57703600-57719000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr12:57703800-57713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:57703800-57720200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:57703800-57723400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:57703800-57725000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr12:57703800-57726600	Weak transcription	Colon Smooth Muscle	Colon
41	chr12:57704000-57709400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr12:57704000-57713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr12:57704000-57713200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr12:57704000-57720600	Weak transcription	Placenta	Placenta
45	chr12:57704000-57726400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:57704200-57709200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr12:57704200-57709200	Weak transcription	NHEK	skin
48	chr12:57704200-57713200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr12:57704200-57718400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr12:57704200-57718800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links