Variant report

Variant	rs10747778
Chromosome Location	chr12:57694418-57694419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57693773..57695685-chr12:57852034..57854514,2	K562	blood:

Variant related genes	Relation type
ENSG00000111087	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10747777	1.00[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783818	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10783819	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10783820	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10783823	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876976	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs10876977	0.82[ASN][1000 genomes]
rs10876978	0.82[AMR][1000 genomes]
rs11172156	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11172160	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11172165	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172169	0.87[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11172170	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172177	0.81[EUR][1000 genomes]
rs11172190	0.91[CEU][hapmap]
rs11609986	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12296766	1.00[CEU][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310220	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579911	1.00[CEU][hapmap]
rs12812140	0.95[CEU][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1798710	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2063778	0.95[CEU][hapmap]
rs35032945	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3923885	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4075325	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4760192	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4760193	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4760228	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4760236	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4760308	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4760348	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4760356	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4760357	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs481196	1.00[CEU][hapmap]
rs491750	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs512223	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs533975	1.00[CEU][hapmap]
rs537482	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs543410	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs560048	1.00[CEU][hapmap]
rs575153	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs6581131	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6581134	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6581135	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6581136	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6581139	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7133366	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7133939	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7135142	1.00[CEU][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7298418	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7307059	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7309659	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7313824	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7314266	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7358684	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7398058	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7486863	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7975649	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7977908	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57670600-57698600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:57670600-57700000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr12:57671000-57700000	Strong transcription	Liver	Liver
7	chr12:57674400-57697000	Strong transcription	Placenta	Placenta
8	chr12:57674600-57697000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:57674600-57700000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:57674600-57702600	Weak transcription	HUVEC	blood vessel
11	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr12:57674800-57697400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr12:57674800-57697800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:57674800-57700000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:57674800-57701000	Strong transcription	Primary T cells from cord blood	blood
16	chr12:57675000-57698400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:57675000-57699400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr12:57675000-57700000	Strong transcription	Fetal Thymus	thymus
19	chr12:57675000-57701000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr12:57675600-57694800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:57676200-57700000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:57676200-57700000	Strong transcription	Fetal Intestine Large	intestine
24	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
25	chr12:57678000-57699400	Weak transcription	A549	lung
26	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr12:57679200-57696000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:57679200-57699800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr12:57679600-57694600	Strong transcription	HSMM	muscle
30	chr12:57680000-57698800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:57682400-57694600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr12:57682400-57696200	Strong transcription	Dnd41	blood
33	chr12:57682400-57700200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr12:57682800-57695000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:57682800-57695400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr12:57682800-57698600	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr12:57682800-57700200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr12:57684000-57699800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:57684200-57699000	Weak transcription	Fetal Brain Male	brain
40	chr12:57684600-57700200	Strong transcription	Primary B cells from cord blood	blood
41	chr12:57684800-57700000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr12:57685400-57700000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr12:57685400-57700400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr12:57686000-57695800	Weak transcription	Right Ventricle	heart
45	chr12:57689200-57701800	Weak transcription	Brain Substantia Nigra	brain
46	chr12:57689200-57703200	Weak transcription	Hela-S3	cervix
47	chr12:57689400-57695200	Weak transcription	Fetal Kidney	kidney
48	chr12:57689400-57696600	Weak transcription	HSMMtube	muscle
49	chr12:57689600-57703000	Weak transcription	HMEC	breast
50	chr12:57689800-57694600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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