Variant report

Variant	rs3923885
Chromosome Location	chr12:57634698-57634699
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr12:57634117-57634726	ECC-1	luminal epithelium:	n/a	n/a
2	MAX	chr12:57634150-57634879	GM12878	blood:	n/a	chr12:57634557-57634566 chr12:57634323-57634333
3	SPI1	chr12:57634107-57634813	HL-60	blood:	n/a	chr12:57634604-57634617
4	POLR2A	chr12:57632726-57635649	Raji	blood:	n/a	n/a
5	POLR2A	chr12:57632728-57635007	H1-neurons	neurons:	n/a	n/a
6	CTCF	chr12:57634600-57634750	GM12869	blood:	n/a	n/a
7	MAX	chr12:57633475-57634824	ECC-1	luminal epithelium:	n/a	chr12:57634557-57634566 chr12:57633960-57633969 chr12:57634323-57634333
8	EGR1	chr12:57633997-57634708	K562	blood:	n/a	chr12:57634429-57634442 chr12:57634428-57634442 chr12:57634430-57634441 chr12:57634430-57634440 chr12:57634323-57634333 chr12:57634190-57634203 chr12:57634424-57634446 chr12:57634320-57634333 chr12:57634195-57634210 chr12:57634426-57634440 chr12:57634199-57634208 chr12:57634429-57634442 chr12:57634195-57634205 chr12:57634124-57634137 chr12:57634430-57634440 chr12:57634430-57634441
9	POLR2A	chr12:57632824-57634840	IMR90	lung:	n/a	n/a
10	ZEB1	chr12:57634275-57634953	GM12878	blood:	n/a	n/a
11	TEAD4	chr12:57634140-57634711	K562	blood:	n/a	n/a
12	EGR1	chr12:57634023-57635018	MCF-7	breast:	n/a	chr12:57634429-57634442 chr12:57634790-57634803 chr12:57634428-57634442 chr12:57634430-57634441 chr12:57634430-57634440 chr12:57634323-57634333 chr12:57634190-57634203 chr12:57634424-57634446 chr12:57634320-57634333 chr12:57634195-57634210 chr12:57634426-57634440 chr12:57634199-57634208 chr12:57634429-57634442 chr12:57634195-57634205 chr12:57634124-57634137 chr12:57634430-57634440 chr12:57634795-57634810 chr12:57634430-57634441
13	EGR1	chr12:57634044-57634865	ECC-1	luminal epithelium:	n/a	chr12:57634429-57634442 chr12:57634790-57634803 chr12:57634428-57634442 chr12:57634430-57634441 chr12:57634430-57634440 chr12:57634323-57634333 chr12:57634190-57634203 chr12:57634424-57634446 chr12:57634320-57634333 chr12:57634195-57634210 chr12:57634426-57634440 chr12:57634199-57634208 chr12:57634429-57634442 chr12:57634195-57634205 chr12:57634124-57634137 chr12:57634430-57634440 chr12:57634795-57634810 chr12:57634430-57634441
14	SIN3A	chr12:57632041-57635117	H1-hESC	embryonic stem cell:	n/a	chr12:57633985-57633994 chr12:57635049-57635060 chr12:57634171-57634184 chr12:57632501-57632514 chr12:57632476-57632490
15	MAX	chr12:57633506-57634776	ECC-1	luminal epithelium:	n/a	chr12:57634557-57634566 chr12:57633960-57633969 chr12:57634323-57634333
16	MAZ	chr12:57632616-57634738	IMR90	lung:	n/a	chr12:57634557-57634566 chr12:57633323-57633333 chr12:57633960-57633969 chr12:57634323-57634333
17	POLR2A	chr12:57632637-57634824	ECC-1	luminal epithelium:	n/a	n/a
18	JUN	chr12:57633684-57634764	K562	blood:	n/a	chr12:57634158-57634169 chr12:57633963-57633974
19	POLR2A	chr12:57628648-57635024	U87	brain:	n/a	n/a
20	SUZ12	chr12:57634282-57635017	H1-hESC	embryonic stem cell:	n/a	n/a
21	SIN3AK20	chr12:57633923-57635212	MCF-7	breast:	n/a	n/a
22	TCF12	chr12:57632552-57634862	A549	lung:	n/a	chr12:57634682-57634689
23	MTA3	chr12:57633900-57635003	GM12878	blood:	n/a	n/a
24	MXI1	chr12:57632428-57635914	IMR90	lung:	n/a	n/a
25	ELF1	chr12:57634155-57634831	MCF-7	breast:	n/a	chr12:57634502-57634515 chr12:57634402-57634411
26	TCF12	chr12:57633588-57634746	ECC-1	luminal epithelium:	n/a	chr12:57634682-57634689
27	MAX	chr12:57633758-57635202	MCF-7	breast:	n/a	chr12:57634557-57634566 chr12:57633960-57633969 chr12:57634323-57634333
28	CTCF	chr12:57634580-57634730	GM06990	blood:	n/a	n/a
29	CCNT2	chr12:57633712-57634794	K562	blood:	n/a	chr12:57634195-57634204
30	MXI1	chr12:57632140-57636615	SK-N-SH	brain:	n/a	n/a
31	CTCF	chr12:57634620-57634770	GM12872	blood:	n/a	n/a
32	MAX	chr12:57632726-57635084	A549	lung:	n/a	chr12:57634557-57634566 chr12:57633323-57633333 chr12:57633960-57633969 chr12:57634323-57634333
33	MXI1	chr12:57634220-57635091	H1-hESC	embryonic stem cell:	n/a	n/a
34	EGR1	chr12:57633909-57634877	HCT-116	colon:	n/a	chr12:57634429-57634442 chr12:57634790-57634803 chr12:57634428-57634442 chr12:57634430-57634441 chr12:57634430-57634440 chr12:57634323-57634333 chr12:57634190-57634203 chr12:57634424-57634446 chr12:57634320-57634333 chr12:57634195-57634210 chr12:57634426-57634440 chr12:57634199-57634208 chr12:57634429-57634442 chr12:57634195-57634205 chr12:57634124-57634137 chr12:57634430-57634440 chr12:57634795-57634810 chr12:57634430-57634441
35	POLR2A	chr12:57632720-57634698	HL-60	blood:	n/a	n/a
36	CTCF	chr12:57634620-57634770	HEEpiC	esophagus:	n/a	n/a
37	EGR1	chr12:57633962-57634947	ECC-1	luminal epithelium:	n/a	chr12:57634429-57634442 chr12:57634790-57634803 chr12:57634428-57634442 chr12:57634430-57634441 chr12:57634430-57634440 chr12:57634323-57634333 chr12:57634190-57634203 chr12:57634424-57634446 chr12:57634320-57634333 chr12:57634195-57634210 chr12:57634426-57634440 chr12:57634199-57634208 chr12:57634429-57634442 chr12:57634195-57634205 chr12:57634124-57634137 chr12:57634430-57634440 chr12:57634795-57634810 chr12:57634430-57634441
38	HA-E2F1	chr12:57633813-57634735	MCF-7	breast:	n/a	chr12:57634325-57634337 chr12:57634195-57634204
39	CTCF	chr12:57631820-57635252	SK-N-SH	brain:	n/a	chr12:57634460-57634468 chr12:57633007-57633016 chr12:57633003-57633016 chr12:57633002-57633018 chr12:57634530-57634538 chr12:57633004-57633014 chr12:57633001-57633019 chr12:57632996-57633017
40	BACH1	chr12:57634247-57634907	H1-hESC	embryonic stem cell:	n/a	n/a
41	EGR1	chr12:57634092-57634756	MCF-7	breast:	n/a	chr12:57634429-57634442 chr12:57634428-57634442 chr12:57634430-57634441 chr12:57634430-57634440 chr12:57634323-57634333 chr12:57634190-57634203 chr12:57634424-57634446 chr12:57634320-57634333 chr12:57634195-57634210 chr12:57634426-57634440 chr12:57634199-57634208 chr12:57634429-57634442 chr12:57634195-57634205 chr12:57634124-57634137 chr12:57634430-57634440 chr12:57634430-57634441
42	POLR2A	chr12:57628524-57635029	ECC-1	luminal epithelium:	n/a	n/a
43	MAX	chr12:57634005-57634744	HCT-116	colon:	n/a	chr12:57634557-57634566 chr12:57634323-57634333
44	HDAC2	chr12:57633880-57635031	MCF-7	breast:	n/a	chr12:57634365-57634374
45	MAX	chr12:57633673-57634698	K562	blood:	n/a	chr12:57634557-57634566 chr12:57633960-57633969 chr12:57634323-57634333
46	REST	chr12:57632540-57635232	H1-neurons	neurons:	n/a	chr12:57632547-57632556 chr12:57633984-57633994 chr12:57634777-57634790 chr12:57633753-57633773 chr12:57634171-57634184 chr12:57632550-57632563 chr12:57635049-57635062 chr12:57632577-57632597
47	STAT5A	chr12:57633823-57634924	GM12878	blood:	n/a	chr12:57634310-57634322
48	RUNX3	chr12:57634156-57634898	GM12878	blood:	n/a	n/a
49	E2F6	chr12:57633503-57634772	A549	lung:	n/a	chr12:57634325-57634337 chr12:57634195-57634204
50	CTCF	chr12:57632349-57635195	A549	lung:	n/a	chr12:57634460-57634468 chr12:57633007-57633016 chr12:57633003-57633016 chr12:57633002-57633018 chr12:57634530-57634538 chr12:57633004-57633014 chr12:57633001-57633019 chr12:57632996-57633017

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:57634677-57634727	HEK293	kidney:	embryo
2	chr12:57634665-57634715	AG04450	lung:	fetal
3	chr12:57634665-57634715	NH-A	brain:	n/a
4	chr12:57634677-57634727	ProgFib	skin:	n/a
5	chr12:57634677-57634727	GM12878	blood:	n/a
6	chr12:57634677-57634727	HEEpiC	esophagus:	n/a
7	chr12:57634665-57634715	PFSK-1	brain:	n/a
8	chr12:57634677-57634727	HMEC	breast:	n/a
9	chr12:57634677-57634727	HCPEpiC	choroid plexus:	n/a
10	chr12:57634677-57634727	LNCaP	prostate:	n/a
11	chr12:57634677-57634727	Hepatocyte	liver:	n/a
12	chr12:57634677-57634727	SK-N-SH_RA	brain:	n/a
13	chr12:57634665-57634715	HepG2	liver:	n/a
14	chr12:57634665-57634715	SK-N-MC	brain:	n/a
15	chr12:57634677-57634727	HCM	heart:	n/a
16	chr12:57634677-57634727	NHBE	bronchial:	n/a
17	chr12:57634677-57634727	HRCEpiC	kidney:	n/a
18	chr12:57634665-57634715	HL-60	blood:	n/a
19	chr12:57634665-57634715	A549	lung:	n/a
20	chr12:57634677-57634727	NT2-D1	testis:	n/a
21	chr12:57634665-57634715	AG04449	skin:	fetal
22	chr12:57634665-57634715	T-47D	breast:	n/a
23	chr12:57634665-57634715	ECC-1	luminal epithelium:	n/a
24	chr12:57634677-57634727	HUVEC	blood vessel:	n/a
25	chr12:57634677-57634727	HCF	heart:	n/a
26	chr12:57634665-57634715	SKMC	muscle:	n/a
27	chr12:57634665-57634715	SK-N-SH	brain:	n/a
28	chr12:57634665-57634715	ovcar-3	ovarian:	n/a
29	chr12:57634677-57634727	HepG2	liver:	n/a
30	chr12:57634677-57634727	K562	blood:	n/a
31	chr12:57634677-57634727	NH-A	brain:	n/a
32	chr12:57634677-57634727	GM19239	blood:	n/a
33	chr12:57634677-57634727	AG04449	skin:	fetal
34	chr12:57634677-57634727	AG09309	skin:	n/a
35	chr12:57634677-57634727	SK-N-MC	brain:	n/a
36	chr12:57634677-57634727	A549	lung:	n/a
37	chr12:57634665-57634715	NT2-D1	testis:	n/a
38	chr12:57634665-57634715	HNPCEpiC	eye:	n/a
39	chr12:57634677-57634727	MCF-7	breast:	n/a
40	chr12:57634665-57634715	AG09319	gingival:	n/a
41	chr12:57634665-57634715	IMR90	lung:	fetal
42	chr12:57634665-57634715	SAEC	small airway:	n/a
43	chr12:57634677-57634727	BJ	skin:	n/a
44	chr12:57634677-57634727	GM12891	blood:	n/a
45	chr12:57634665-57634715	K562	blood:	n/a
46	chr12:57634677-57634727	NHDF-neo	bronchial:	n/a
47	chr12:57634677-57634727	H1-hESC	embryonic stem cell:	embryo
48	chr12:57634677-57634727	ovcar-3	ovarian:	n/a
49	chr12:57634677-57634727	SKMC	muscle:	n/a
50	chr12:57634677-57634727	HAEpiC	amniotic membrane:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:57593061..57596040-chr12:57632973..57635946,3	K562	blood:
2	chr12:57634341..57637032-chr12:58003121..58004920,2	K562	blood:
3	chr12:57633078..57634752-chr12:120728472..120731115,2	MCF-7	breast:
4	chr12:57521132..57523355-chr12:57632415..57635225,2	K562	blood:
5	chr12:57503657..57505571-chr12:57633144..57635959,2	MCF-7	breast:
6	chr12:57633619..57639143-chr12:57853203..57857806,7	K562	blood:
7	chr12:57632502..57635395-chr12:58164755..58167639,2	MCF-7	breast:
8	chr12:57633994..57636075-chr12:57915508..57917447,2	MCF-7	breast:
9	chr12:57478737..57483929-chr12:57633097..57638164,8	MCF-7	breast:

Variant related genes	Relation type
NDUFA4L2	TF binding region
NDUFA4L2	CpG island
ENSG00000200795	Chromatin interaction
ENSG00000123384	Chromatin interaction
ENSG00000257921	Chromatin interaction
ENSG00000166888	Chromatin interaction
ENSG00000166886	Chromatin interaction
ENSG00000123427	Chromatin interaction
ENSG00000037897	Chromatin interaction
ENSG00000166881	Chromatin interaction
ENSG00000111087	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000240771	Chromatin interaction
ENSG00000166987	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10747777	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10747778	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783818	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10783819	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783820	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876976	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs11172156	0.96[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs11172160	0.84[EUR][1000 genomes]
rs11172165	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11172169	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs11172170	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11172190	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs11609986	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12296766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12310220	0.80[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12579911	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap]
rs12812140	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs1798710	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap]
rs2063778	0.96[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap]
rs4075325	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4760192	0.82[EUR][1000 genomes]
rs4760193	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4760236	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs4760308	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4760348	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4760356	0.82[EUR][1000 genomes]
rs481196	1.00[CEU][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap]
rs491750	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs533975	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.97[TSI][hapmap]
rs537482	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs543410	0.87[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap]
rs560048	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.97[TSI][hapmap]
rs575153	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs6581131	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6581134	0.87[ASW][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6581135	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6581136	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7132367	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7133939	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7135142	0.96[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7298418	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7307059	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs7309659	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs7313824	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7314266	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7358684	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7398058	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs7486863	0.96[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs7977908	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	nsv518980	chr12:57532982-57637593	Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv1810281	chr12:57558657-57641094	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv1827238	chr12:57561918-57641094	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv1796377	chr12:57577246-57638936	Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	esv1827692	chr12:57582852-57651345	Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv519293	chr12:57583672-57637593	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57628600-57636200	Weak transcription	Hela-S3	cervix
2	chr12:57631600-57635000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:57631600-57635600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:57631800-57634800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr12:57631800-57634800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:57631800-57634800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
7	chr12:57631800-57635000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:57631800-57635000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
9	chr12:57631800-57635200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr12:57632000-57634800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
11	chr12:57632000-57635000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr12:57632000-57635000	Flanking Active TSS	Right Ventricle	heart
13	chr12:57632000-57635000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
14	chr12:57632000-57635200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr12:57632200-57635200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:57632400-57635000	Flanking Bivalent TSS/Enh	NHEK	skin
17	chr12:57632600-57634800	Flanking Active TSS	HMEC	breast
18	chr12:57632800-57635000	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr12:57632800-57635400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:57632800-57635400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
21	chr12:57632800-57636400	Bivalent Enhancer	Fetal Heart	heart
22	chr12:57633200-57634800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:57633200-57634800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:57633200-57634800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
25	chr12:57633200-57634800	Flanking Bivalent TSS/Enh	NH-A	brain
26	chr12:57633200-57635000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
27	chr12:57633400-57634800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:57633600-57634800	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr12:57633600-57634800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
30	chr12:57633600-57634800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
31	chr12:57633600-57634800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr12:57633600-57634800	Flanking Bivalent TSS/Enh	Placenta	Placenta
33	chr12:57633600-57634800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
34	chr12:57633600-57635200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
35	chr12:57633800-57634800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
36	chr12:57633800-57634800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr12:57633800-57635000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
38	chr12:57633800-57635000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr12:57633800-57635200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
40	chr12:57634000-57634800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
41	chr12:57634000-57635200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
42	chr12:57634200-57634800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
43	chr12:57634200-57634800	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
44	chr12:57634200-57634800	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
45	chr12:57634200-57635000	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:57634200-57635200	Flanking Active TSS	Fetal Brain Male	brain
47	chr12:57634200-57635200	Flanking Bivalent TSS/Enh	HepG2	liver
48	chr12:57634200-57635600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr12:57634200-57635600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
50	chr12:57634400-57634800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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