Variant report

Variant	rs545616
Chromosome Location	chr10:25589071-25589072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10828776	0.82[CHB][hapmap]
rs1413398	0.85[CEU][hapmap];0.86[ASN][1000 genomes]
rs1760750	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs1760757	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[ASN][1000 genomes]
rs1773650	0.85[CEU][hapmap]
rs1812401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855462	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2262990	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs489052	0.87[CEU][hapmap]
rs539357	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs543850	0.85[CEU][hapmap]
rs545905	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs564371	0.84[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs573812	0.87[CEU][hapmap]
rs577382	0.84[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824144	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs824153	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs961027	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25582000-25592000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25588800-25589400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr10:25588800-25589600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:25588800-25589800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:25589000-25589400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:25589000-25589600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:25589000-25589600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:25589000-25589600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:25589000-25589800	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links