Variant report

Variant	rs552411880
Chromosome Location	chr15:55671596-55671597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv904243	chr15:55627528-55734158	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv520799	chr15:55645661-55760522	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	esv3311789	chr15:55671227-55673140	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3311790	chr15:55671227-55673140	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55611800-55699400	Weak transcription	Colonic Mucosa	Colon
2	chr15:55612600-55675600	Weak transcription	Aorta	Aorta
3	chr15:55612800-55677600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:55630000-55695000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:55630400-55675600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:55630800-55683600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:55631200-55674000	Weak transcription	Placenta	Placenta
8	chr15:55635800-55675200	Weak transcription	Fetal Brain Male	brain
9	chr15:55636600-55678200	Weak transcription	Fetal Thymus	thymus
10	chr15:55637000-55699600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:55637400-55680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:55641000-55671600	Weak transcription	Thymus	Thymus
13	chr15:55645000-55680800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:55645600-55681400	Weak transcription	Stomach Mucosa	stomach
15	chr15:55647800-55695400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:55648800-55675800	Weak transcription	Dnd41	blood
17	chr15:55649200-55681000	Weak transcription	HSMM	muscle
18	chr15:55649800-55695800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:55650800-55680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:55651000-55675200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:55652800-55675800	Weak transcription	NHDF-Ad	bronchial
22	chr15:55653000-55675200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:55659600-55672200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:55659600-55682000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:55660200-55672200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:55661200-55672000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:55661200-55680800	Weak transcription	NHLF	lung
28	chr15:55662200-55681600	Weak transcription	Esophagus	oesophagus
29	chr15:55662600-55672200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:55662800-55674000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:55663400-55672000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:55664000-55675400	Weak transcription	Fetal Lung	lung
33	chr15:55664200-55675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:55664200-55681200	Weak transcription	NH-A	brain
35	chr15:55665200-55672200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:55665600-55672200	Strong transcription	Liver	Liver
37	chr15:55665800-55672200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:55665800-55675200	Weak transcription	Fetal Kidney	kidney
39	chr15:55665800-55676800	Weak transcription	HepG2	liver
40	chr15:55665800-55680800	Weak transcription	A549	lung
41	chr15:55666000-55672000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:55666000-55681200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:55666200-55671800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:55666200-55671800	Strong transcription	Left Ventricle	heart
45	chr15:55666200-55673600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:55666200-55675400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:55666200-55680600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr15:55666200-55684000	Weak transcription	HUVEC	blood vessel
49	chr15:55666600-55675600	Weak transcription	GM12878-XiMat	blood
50	chr15:55667000-55672000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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