Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1189635	0.80[AFR][1000 genomes]
rs12148725	0.88[ASN][1000 genomes]
rs2460612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28438893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475496	0.88[ASN][1000 genomes]
rs485510	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306873	0.88[ASN][1000 genomes]
rs62006003	1.00[ASN][1000 genomes]
rs62023565	0.88[ASN][1000 genomes]
rs62023567	0.88[ASN][1000 genomes]
rs62023581	0.88[ASN][1000 genomes]
rs62023582	0.88[ASN][1000 genomes]
rs62023583	0.88[ASN][1000 genomes]
rs62023585	0.88[ASN][1000 genomes]
rs62023588	0.88[ASN][1000 genomes]
rs830812	1.00[EUR][1000 genomes]
rs906498	0.88[ASN][1000 genomes]
rs969907	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569430	chr15:53518466-53543226	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1046730	chr15:53522035-53587952	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1054695	chr15:53522035-53594749	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53527600-53542400	Weak transcription	Pancreas	Pancrea
2	chr15:53538600-53538800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:53538600-53539800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:53538600-53540400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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