Variant report

Variant rs554788
Chromosome Location chr12:378729-378730
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:372000-379200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr12:372400-393600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr12:373200-391200 Weak transcription Lung lung
4 chr12:373200-393600 Weak transcription A549 lung
5 chr12:373200-401400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr12:373600-387800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr12:373600-388200 Weak transcription HSMM muscle
8 chr12:373800-393000 Weak transcription Thymus Thymus
9 chr12:374200-389800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr12:375400-388000 Weak transcription Primary T cells from cord blood blood
11 chr12:376600-391000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr12:376800-378800 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
13 chr12:376800-393800 Weak transcription Fetal Kidney kidney
14 chr12:377200-379000 Enhancers Fetal Muscle Leg muscle
15 chr12:377200-379000 Enhancers Right Atrium heart
16 chr12:377200-392400 Weak transcription Osteobl bone
17 chr12:377400-378800 Bivalent Enhancer Fetal Lung lung
18 chr12:377400-382200 Weak transcription Small Intestine intestine
19 chr12:377400-391200 Weak transcription Adipose Nuclei Adipose
20 chr12:377400-393800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr12:377600-380200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr12:377600-380400 Weak transcription HepG2 liver
23 chr12:377600-388000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr12:377800-378800 Enhancers Brain Hippocampus Middle brain
25 chr12:377800-380200 Weak transcription Liver Liver
26 chr12:377800-391600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr12:378000-378800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
28 chr12:378000-380000 Weak transcription Brain Anterior Caudate brain
29 chr12:378000-382200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr12:378000-382600 Weak transcription Gastric stomach
31 chr12:378000-388000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr12:378000-388400 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr12:378000-392000 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr12:378000-393600 Weak transcription Brain Substantia Nigra brain
35 chr12:378000-393600 Weak transcription Fetal Brain Female brain
36 chr12:378000-393600 Weak transcription Pancreas Pancrea
37 chr12:378400-378800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr12:378400-378800 Enhancers Esophagus oesophagus
39 chr12:378600-378800 Bivalent Enhancer IMR90 fetal lung fibroblasts Cell Line lung
40 chr12:378600-378800 Enhancers Brain Angular Gyrus brain
41 chr12:378600-378800 Enhancers Brain Cingulate Gyrus brain
42 chr12:378600-378800 Bivalent Enhancer Fetal Muscle Trunk muscle
43 chr12:378600-378800 Enhancers Left Ventricle heart
44 chr12:378600-378800 Enhancers Ovary ovary
45 chr12:378600-379000 Enhancers Brain Germinal Matrix brain
46 chr12:378600-379200 Enhancers Placenta Placenta
47 chr12:378600-380200 Weak transcription Fetal Stomach stomach
48 chr12:378600-380200 Weak transcription HSMMtube muscle
49 chr12:378600-388200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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