Variant report

Variant	rs55637101
Chromosome Location	chr2:86054810-86054811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86054177..86056826-chr2:86305154..86307872,2	MCF-7	breast:
2	chr2:86054589..86055163-chr2:86305452..86306492,4	K562	blood:
3	chr2:86054287..86055622-chr2:86306024..86306629,3	MCF-7	breast:
4	chr2:86053537..86056634-chr2:86057076..86060323,3	K562	blood:
5	chr2:86041294..86041978-chr2:86054251..86055110,2	K562	blood:
6	chr2:86054352..86055082-chr2:86115931..86116704,2	MCF-7	breast:
7	chr2:86054004..86055894-chr2:86304722..86306644,12	MCF-7	breast:
8	chr2:86053140..86055095-chr2:86335113..86337888,2	K562	blood:
9	chr2:86054263..86055159-chr2:86306734..86307688,8	K562	blood:
10	chr2:86054291..86055159-chr2:86262823..86263723,2	MCF-7	breast:
11	chr2:86054378..86057135-chr2:86114999..86116544,2	MCF-7	breast:
12	chr2:86053903..86054829-chr2:86251609..86252561,2	MCF-7	breast:
13	chr2:86054186..86055161-chr2:86306747..86308111,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232504	Chromatin interaction
ENSG00000132300	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10192507	0.87[EUR][1000 genomes]
rs13422943	0.92[EUR][1000 genomes]
rs13423116	0.92[EUR][1000 genomes]
rs55746113	0.84[EUR][1000 genomes]
rs55763047	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55841727	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56075967	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56232523	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363459	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57536133	0.93[EUR][1000 genomes]
rs59444093	0.80[AFR][1000 genomes]
rs66990144	0.82[AFR][1000 genomes]
rs6724442	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6753123	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72842020	0.93[EUR][1000 genomes]
rs72842049	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72842057	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72842058	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73943774	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7591383	0.92[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
2	chr2:86054200-86055000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr2:86054200-86055400	Enhancers	Fetal Muscle Leg	muscle
4	chr2:86054200-86055600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:86054200-86055800	Enhancers	Fetal Thymus	thymus
6	chr2:86054400-86055000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:86054400-86055000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:86054400-86055000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:86054400-86055000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:86054400-86055000	Enhancers	Psoas Muscle	Psoas
11	chr2:86054400-86055000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr2:86054400-86055200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:86054400-86055200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr2:86054400-86055200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:86054400-86055200	Enhancers	Liver	Liver
16	chr2:86054400-86055200	Enhancers	Fetal Lung	lung
17	chr2:86054400-86055200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr2:86054400-86055200	Enhancers	NHLF	lung
19	chr2:86054400-86055400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:86054400-86055400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr2:86054400-86055600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:86054400-86055600	Enhancers	Pancreas	Pancrea
23	chr2:86054400-86055800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr2:86054400-86055800	Enhancers	Spleen	Spleen
25	chr2:86054400-86057800	Enhancers	Dnd41	blood
26	chr2:86054600-86055000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:86054600-86055000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr2:86054600-86055000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr2:86054600-86055000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:86054600-86055000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr2:86054600-86055000	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr2:86054600-86055000	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr2:86054600-86055000	Active TSS	Hela-S3	cervix
34	chr2:86054600-86055200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:86054600-86055200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:86054600-86055200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr2:86054600-86055200	Bivalent Enhancer	Fetal Stomach	stomach
38	chr2:86054600-86055200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr2:86054600-86055200	Active TSS	Osteobl	bone
40	chr2:86054600-86055400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:86054600-86055400	Enhancers	Primary B cells from peripheral blood	blood
42	chr2:86054800-86055000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:86054800-86055000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:86054800-86055000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:86054800-86055000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:86054800-86055000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr2:86054800-86055000	Enhancers	Primary B cells from cord blood	blood
48	chr2:86054800-86055000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr2:86054800-86055000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr2:86054800-86055000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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