Variant report

Variant	rs56363459
Chromosome Location	chr2:86054301-86054302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86054177..86056826-chr2:86305154..86307872,2	MCF-7	breast:
2	chr2:86054287..86055622-chr2:86306024..86306629,3	MCF-7	breast:
3	chr2:86053537..86056634-chr2:86057076..86060323,3	K562	blood:
4	chr2:86041294..86041978-chr2:86054251..86055110,2	K562	blood:
5	chr2:86054004..86055894-chr2:86304722..86306644,12	MCF-7	breast:
6	chr2:86053140..86055095-chr2:86335113..86337888,2	K562	blood:
7	chr2:86054263..86055159-chr2:86306734..86307688,8	K562	blood:
8	chr2:86054291..86055159-chr2:86262823..86263723,2	MCF-7	breast:
9	chr2:86053903..86054829-chr2:86251609..86252561,2	MCF-7	breast:
10	chr2:86054186..86055161-chr2:86306747..86308111,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000132300	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10192507	0.87[EUR][1000 genomes]
rs11676487	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13422943	0.92[EUR][1000 genomes]
rs13423116	0.92[EUR][1000 genomes]
rs55637101	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55746113	0.84[EUR][1000 genomes]
rs55763047	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55841727	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56075967	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56232523	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57536133	0.93[EUR][1000 genomes]
rs59444093	0.89[AFR][1000 genomes]
rs66990144	0.91[AFR][1000 genomes]
rs6724442	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6753123	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72842020	0.93[EUR][1000 genomes]
rs72842049	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72842057	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72842058	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73943774	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7591383	0.92[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:86045600-86054400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:86049800-86054800	Weak transcription	Lung	lung
6	chr2:86051400-86054400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:86051800-86054800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:86054200-86054400	Active TSS	Brain Angular Gyrus	brain
9	chr2:86054200-86054400	Enhancers	Brain Hippocampus Middle	brain
10	chr2:86054200-86054400	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr2:86054200-86054600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:86054200-86054600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:86054200-86054600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:86054200-86054600	Enhancers	Brain Substantia Nigra	brain
15	chr2:86054200-86054600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:86054200-86054800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:86054200-86054800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr2:86054200-86055000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr2:86054200-86055400	Enhancers	Fetal Muscle Leg	muscle
20	chr2:86054200-86055600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:86054200-86055800	Enhancers	Fetal Thymus	thymus

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