The 2.0 version of rSNPBase

Variant report

Variant rs55641087
Chromosome Location chr1:79124514-79124515
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:79116000-79124800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:79116000-79128600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:79116400-79127200 Weak transcription Fetal Intestine Large intestine
4 chr1:79116400-79129000 Weak transcription Placenta Placenta
5 chr1:79116400-79130000 Weak transcription Stomach Mucosa stomach
6 chr1:79117000-79132800 Weak transcription Fetal Brain Male brain
7 chr1:79117400-79124600 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:79117400-79126800 Weak transcription Fetal Muscle Trunk muscle
9 chr1:79117400-79128400 Weak transcription HSMMtube muscle
10 chr1:79117400-79129800 Weak transcription NHLF lung
11 chr1:79117400-79130400 Weak transcription Pancreas Pancrea
12 chr1:79117400-79130600 Weak transcription Hela-S3 cervix
13 chr1:79117400-79131200 Weak transcription HSMM muscle
14 chr1:79117400-79144000 Weak transcription Esophagus oesophagus
15 chr1:79117400-79144000 Weak transcription Spleen Spleen
16 chr1:79117600-79127000 Weak transcription Brain Substantia Nigra brain
17 chr1:79117600-79129000 Weak transcription Colon Smooth Muscle Colon
18 chr1:79117600-79129400 Weak transcription NH-A brain
19 chr1:79117600-79153000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:79117800-79125000 Weak transcription Primary B cells from peripheral blood blood
21 chr1:79117800-79130200 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:79118200-79125200 Weak transcription Stomach Smooth Muscle stomach
23 chr1:79118200-79127400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr1:79118400-79124600 Weak transcription Ovary ovary
25 chr1:79118400-79127000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:79118400-79127200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:79118400-79128600 Weak transcription Thymus Thymus
28 chr1:79118400-79130800 Weak transcription Rectal Smooth Muscle rectum
29 chr1:79118400-79130800 Weak transcription Small Intestine intestine
30 chr1:79118600-79124600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:79118600-79130800 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:79119200-79129400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:79119200-79130800 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr1:79119400-79126400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:79119400-79129400 Weak transcription Brain Germinal Matrix brain
36 chr1:79119400-79129600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
37 chr1:79119400-79130400 Strong transcription Primary monocytes fromperipheralblood blood
38 chr1:79119600-79125400 Weak transcription Fetal Brain Female brain
39 chr1:79119800-79124600 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr1:79119800-79128400 Weak transcription Brain Hippocampus Middle brain
41 chr1:79119800-79130000 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr1:79119800-79130800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:79119800-79130800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:79119800-79132600 Weak transcription Right Ventricle heart
45 chr1:79120000-79124800 Weak transcription Brain Anterior Caudate brain
46 chr1:79120000-79129400 Strong transcription Primary T helper cells PMA-I stimulated --
47 chr1:79120400-79130200 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr1:79120600-79129200 Strong transcription Fetal Lung lung
49 chr1:79120600-79129400 Strong transcription Primary T cells fromperipheralblood blood
50 chr1:79120600-79130000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015