Variant report

Variant	rs59367539
Chromosome Location	chr1:79221989-79221990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17102120	1.00[AMR][1000 genomes]
rs55641087	1.00[AMR][1000 genomes]
rs55927436	1.00[AMR][1000 genomes]
rs56122816	1.00[AMR][1000 genomes]
rs56199072	1.00[AMR][1000 genomes]
rs56294778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57435109	1.00[AMR][1000 genomes]
rs57501000	1.00[AMR][1000 genomes]
rs58128375	1.00[AMR][1000 genomes]
rs58160764	1.00[AMR][1000 genomes]
rs72941639	1.00[AMR][1000 genomes]
rs74091960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74091967	1.00[AMR][1000 genomes]
rs74092053	1.00[AMR][1000 genomes]
rs74092055	1.00[AMR][1000 genomes]
rs74092056	1.00[AMR][1000 genomes]
rs74092060	1.00[AMR][1000 genomes]
rs74092069	1.00[AMR][1000 genomes]
rs74092086	1.00[AMR][1000 genomes]
rs74094707	1.00[AMR][1000 genomes]
rs74094729	1.00[AMR][1000 genomes]
rs74094736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv526221	chr1:79197624-79487080	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv817535	chr1:79203834-79473089	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79221400-79222000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:79221400-79222400	Enhancers	HMEC	breast
3	chr1:79221400-79222400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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