Variant report

Variant	rs74092055
Chromosome Location	chr1:79117157-79117158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17102120	1.00[AMR][1000 genomes]
rs55641087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55927436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56122816	1.00[AMR][1000 genomes]
rs56199072	1.00[AMR][1000 genomes]
rs56294778	1.00[AMR][1000 genomes]
rs57435109	1.00[AMR][1000 genomes]
rs57501000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58128375	1.00[AMR][1000 genomes]
rs58160764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59367539	1.00[AMR][1000 genomes]
rs72941639	1.00[AMR][1000 genomes]
rs74091960	1.00[AMR][1000 genomes]
rs74091967	1.00[AMR][1000 genomes]
rs74092053	1.00[AMR][1000 genomes]
rs74092056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74092060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74092069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74092086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74094707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74094729	1.00[AMR][1000 genomes]
rs74094736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv871140	chr1:79095581-79155134	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79115000-79117600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:79115000-79118200	Active TSS	Stomach Smooth Muscle	stomach
3	chr1:79115000-79118600	Active TSS	Right Atrium	heart
4	chr1:79115200-79117200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr1:79115200-79117400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:79115200-79117400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:79115200-79117400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:79115200-79117400	Active TSS	Fetal Lung	lung
9	chr1:79115200-79118000	Active TSS	NHDF-Ad	bronchial
10	chr1:79115200-79119400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:79115400-79117200	Active TSS	Primary T cells fromperipheralblood	blood
12	chr1:79115400-79117200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:79115400-79117200	Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr1:79115400-79117200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr1:79115400-79117200	Active TSS	Adipose Nuclei	Adipose
16	chr1:79115400-79117200	Active TSS	Fetal Stomach	stomach
17	chr1:79115400-79117200	Active TSS	Fetal Thymus	thymus
18	chr1:79115400-79117200	Active TSS	Dnd41	blood
19	chr1:79115400-79117400	Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr1:79115400-79117400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:79115400-79117400	Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr1:79115400-79117400	Active TSS	HSMM	muscle
23	chr1:79115400-79117400	Active TSS	NHLF	lung
24	chr1:79115400-79117600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr1:79115400-79117600	Active TSS	Muscle Satellite Cultured Cells	--
26	chr1:79115400-79117600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:79115400-79117600	Active TSS	Brain Angular Gyrus	brain
28	chr1:79115400-79117600	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr1:79115400-79117600	Active TSS	Brain Substantia Nigra	brain
30	chr1:79115400-79117600	Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr1:79115400-79117600	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr1:79115400-79117600	Active TSS	NH-A	brain
33	chr1:79115400-79117800	Active TSS	Brain Cingulate Gyrus	brain
34	chr1:79115400-79117800	Active TSS	Fetal Muscle Leg	muscle
35	chr1:79115400-79117800	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr1:79115400-79118000	Active TSS	Lung	lung
37	chr1:79115400-79118200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:79115400-79118200	Active TSS	Left Ventricle	heart
39	chr1:79115400-79118200	Active TSS	Right Ventricle	heart
40	chr1:79115400-79118400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:79115400-79118400	Active TSS	Ovary	ovary
42	chr1:79115400-79118400	Active TSS	Rectal Smooth Muscle	rectum
43	chr1:79115400-79118400	Active TSS	Thymus	Thymus
44	chr1:79115400-79118600	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr1:79115400-79119000	Active TSS	Fetal Brain Female	brain
46	chr1:79115600-79118000	Weak transcription	Small Intestine	intestine
47	chr1:79115600-79118400	Active TSS	Psoas Muscle	Psoas
48	chr1:79115800-79118400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr1:79115800-79118600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:79116000-79117400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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