Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17102120	1.00[AMR][1000 genomes]
rs55641087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55927436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56122816	1.00[AMR][1000 genomes]
rs56199072	1.00[AMR][1000 genomes]
rs56294778	1.00[AMR][1000 genomes]
rs57435109	1.00[AMR][1000 genomes]
rs57501000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58128375	1.00[AMR][1000 genomes]
rs58160764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59367539	1.00[AMR][1000 genomes]
rs72941639	1.00[AMR][1000 genomes]
rs74091960	1.00[AMR][1000 genomes]
rs74091967	1.00[AMR][1000 genomes]
rs74092053	1.00[AMR][1000 genomes]
rs74092055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74092056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74092060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74092069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74094707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74094729	1.00[AMR][1000 genomes]
rs74094736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv871140	chr1:79095581-79155134	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79149000-79153200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:79149000-79153400	Weak transcription	NHLF	lung
3	chr1:79149800-79153400	Weak transcription	HUVEC	blood vessel
4	chr1:79151200-79156400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:79152600-79154600	Enhancers	Liver	Liver
6	chr1:79152800-79153400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:79152800-79159000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:79153000-79153600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:79153000-79155000	Enhancers	Fetal Brain Male	brain
10	chr1:79153000-79155000	Enhancers	HSMM	muscle
11	chr1:79153000-79155200	Enhancers	Osteobl	bone
12	chr1:79153000-79159000	Enhancers	NHDF-Ad	bronchial

Quick Search: