Variant report

Variant	rs55660929
Chromosome Location	chr6:164134757-164134758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164131958..164136902-chr6:164137750..164142946,6	K562	blood:
2	chr6:164128182..164130278-chr6:164132166..164136192,3	K562	blood:
3	chr6:27775500..27777130-chr6:164134294..164136651,2	MCF-7	breast:
4	chr6:164132884..164135744-chr6:164150540..164152159,2	K562	blood:
5	chr6:164128425..164130009-chr6:164133926..164136192,2	K562	blood:
6	chr6:164131958..164135418-chr6:164137750..164141579,4	K562	blood:

Variant related genes	Relation type
ENSG00000196747	Chromatin interaction
ENSG00000185130	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12663209	0.86[ASN][1000 genomes]
rs12664781	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12665755	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12665812	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55896086	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56262560	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56292260	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58218631	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58940838	0.86[ASN][1000 genomes]
rs61555711	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66767192	0.86[ASN][1000 genomes]
rs67071357	0.86[ASN][1000 genomes]
rs68041511	0.89[ASN][1000 genomes]
rs73013417	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73017236	0.86[ASN][1000 genomes]
rs73017240	0.86[ASN][1000 genomes]
rs73017247	0.86[ASN][1000 genomes]
rs73029220	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73029224	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73029225	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73029241	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73029267	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73029269	0.83[EUR][1000 genomes]
rs750810	0.89[ASN][1000 genomes]
rs7752027	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164121200-164135200	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:164121800-164135400	Enhancers	Primary B cells from cord blood	blood
3	chr6:164127200-164135400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:164127200-164135400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:164127800-164135600	Enhancers	Fetal Muscle Trunk	muscle
6	chr6:164129000-164134800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:164130000-164134800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:164131000-164151600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:164133600-164135000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:164133600-164138600	Weak transcription	Left Ventricle	heart
11	chr6:164133600-164151400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:164134000-164137800	Weak transcription	Right Ventricle	heart
13	chr6:164134000-164138400	Weak transcription	HSMMtube	muscle
14	chr6:164134000-164140400	Weak transcription	Psoas Muscle	Psoas
15	chr6:164134000-164141000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:164134000-164146000	Weak transcription	Spleen	Spleen
17	chr6:164134200-164134800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:164134200-164135200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:164134200-164135200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:164134200-164135400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:164134200-164139400	Weak transcription	Placenta	Placenta
22	chr6:164134200-164142400	Weak transcription	HSMM	muscle
23	chr6:164134400-164134800	Weak transcription	Brain Anterior Caudate	brain
24	chr6:164134400-164135200	Weak transcription	K562	blood
25	chr6:164134400-164136600	Weak transcription	Lung	lung
26	chr6:164134400-164137600	Weak transcription	GM12878-XiMat	blood
27	chr6:164134400-164138600	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:164134400-164141600	Weak transcription	Brain Angular Gyrus	brain
29	chr6:164134400-164154200	Weak transcription	Right Atrium	heart

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