Variant report

Variant	rs56292260
Chromosome Location	chr6:164128304-164128305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164128182..164130278-chr6:164132166..164136192,3	K562	blood:
2	chr6:164126640..164128502-chr6:164313817..164315579,2	K562	blood:
3	chr6:164117022..164118713-chr6:164126097..164128591,2	MCF-7	breast:
4	chr6:164127592..164129611-chr6:164130012..164131653,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12209978	0.89[ASN][1000 genomes]
rs12214405	0.89[ASN][1000 genomes]
rs12663209	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664781	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12665755	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12665812	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1407656	0.89[ASN][1000 genomes]
rs55660929	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55896086	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56262560	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58218631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58940838	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61555711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66767192	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67071357	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68041511	1.00[ASN][1000 genomes]
rs6938954	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73013417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017236	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017240	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017247	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017275	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73029220	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029225	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029241	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029267	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73029269	1.00[EUR][1000 genomes]
rs750810	1.00[ASN][1000 genomes]
rs7752027	1.00[ASN][1000 genomes]
rs7775940	0.89[ASN][1000 genomes]
rs9458881	0.89[ASN][1000 genomes]
rs9458883	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164121200-164135200	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:164121800-164135400	Enhancers	Primary B cells from cord blood	blood
3	chr6:164122400-164128800	Weak transcription	K562	blood
4	chr6:164123400-164130600	Weak transcription	Fetal Thymus	thymus
5	chr6:164123600-164128400	Weak transcription	Adipose Nuclei	Adipose
6	chr6:164124800-164128400	Weak transcription	Psoas Muscle	Psoas
7	chr6:164127200-164128400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:164127200-164128400	Weak transcription	Spleen	Spleen
9	chr6:164127200-164128600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:164127200-164134400	Enhancers	Fetal Muscle Leg	muscle
11	chr6:164127200-164135400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:164127200-164135400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:164127400-164128400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:164127400-164128400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:164127400-164129000	Enhancers	Primary T cells from cord blood	blood
16	chr6:164127400-164130400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:164127600-164128800	Weak transcription	Pancreas	Pancrea
18	chr6:164127600-164129000	Enhancers	HSMM	muscle
19	chr6:164127600-164130800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:164127600-164132800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:164127800-164128800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:164127800-164129000	Enhancers	Aorta	Aorta
23	chr6:164127800-164129000	Enhancers	Brain Anterior Caudate	brain
24	chr6:164127800-164129000	Enhancers	Fetal Stomach	stomach
25	chr6:164127800-164129600	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:164127800-164130800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:164127800-164133600	Enhancers	Left Ventricle	heart
28	chr6:164127800-164135600	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:164128000-164128400	Enhancers	Colon Smooth Muscle	Colon
30	chr6:164128000-164128400	Enhancers	GM12878-XiMat	blood
31	chr6:164128000-164129000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:164128000-164129600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:164128000-164130400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:164128000-164132800	Enhancers	Fetal Heart	heart
35	chr6:164128000-164133400	Weak transcription	Esophagus	oesophagus
36	chr6:164128200-164128400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:164128200-164128800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr6:164128200-164129000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr6:164128200-164129000	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr6:164128200-164129000	Enhancers	HSMMtube	muscle
41	chr6:164128200-164129200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:164128200-164129400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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