Variant report

Variant	rs73017275
Chromosome Location	chr6:164170057-164170058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12663209	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12664781	0.89[EUR][1000 genomes]
rs12665755	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12665812	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55896086	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56262560	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56292260	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58218631	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58940838	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60120666	0.95[ASN][1000 genomes]
rs61555711	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66515534	0.95[ASN][1000 genomes]
rs66767192	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67071357	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68041511	0.83[ASN][1000 genomes]
rs6938954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73013417	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73017236	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017240	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017247	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017284	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73019106	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73019121	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73019124	0.93[ASN][1000 genomes]
rs73029220	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029224	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029225	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029241	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029267	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73029269	0.89[EUR][1000 genomes]
rs750810	0.83[ASN][1000 genomes]
rs7752027	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164166400-164170200	Weak transcription	Fetal Brain Male	brain
3	chr6:164166800-164173600	Enhancers	Fetal Heart	heart
4	chr6:164167400-164171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:164167400-164171600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:164167400-164172000	Weak transcription	HSMMtube	muscle
7	chr6:164167800-164171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:164167800-164171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:164167800-164177200	Weak transcription	HSMM	muscle
10	chr6:164168400-164172800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:164168600-164170400	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:164168600-164170400	Enhancers	Left Ventricle	heart
13	chr6:164168600-164170800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:164168600-164171200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:164168600-164171800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:164169000-164170200	Enhancers	Right Ventricle	heart
17	chr6:164169200-164172600	Enhancers	Brain Germinal Matrix	brain
18	chr6:164169600-164172000	Enhancers	Right Atrium	heart
19	chr6:164169800-164170200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:164169800-164171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:164170000-164170200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:164170000-164170200	Enhancers	Fetal Brain Female	brain
23	chr6:164170000-164171600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr6:164170000-164172000	Bivalent Enhancer	Fetal Stomach	stomach

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