Variant report

Variant	rs66515534
Chromosome Location	chr6:164178801-164178802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164178512..164183327-chr6:164184288..164188276,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60120666	1.00[ASN][1000 genomes]
rs6938954	0.95[ASN][1000 genomes]
rs73017275	0.95[ASN][1000 genomes]
rs73017284	1.00[ASN][1000 genomes]
rs73019106	1.00[ASN][1000 genomes]
rs73019121	1.00[ASN][1000 genomes]
rs73019124	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164172400-164180400	Weak transcription	K562	blood
3	chr6:164174800-164179200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:164175000-164179600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:164176000-164179200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:164176200-164179000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:164177600-164182200	Weak transcription	HSMM	muscle
8	chr6:164178400-164179000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:164178400-164179200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:164178400-164179200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:164178400-164179200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:164178400-164179200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:164178400-164179200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:164178400-164179200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:164178400-164179200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:164178400-164179400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:164178600-164179000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:164178600-164179000	Enhancers	Fetal Muscle Leg	muscle
19	chr6:164178600-164179400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:164178600-164182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:164178600-164185600	Weak transcription	Left Ventricle	heart
22	chr6:164178800-164179000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr6:164178800-164179000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:164178800-164179200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:164178800-164182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:164178800-164185400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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