Variant report

Variant	rs73019106
Chromosome Location	chr6:164174660-164174661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12663209	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58940838	0.90[EUR][1000 genomes]
rs60120666	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515534	1.00[ASN][1000 genomes]
rs66767192	0.90[EUR][1000 genomes]
rs67071357	0.90[EUR][1000 genomes]
rs6938954	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73017236	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73017240	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73017247	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73017275	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73017284	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019121	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019124	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164167800-164177200	Weak transcription	HSMM	muscle
3	chr6:164171800-164174800	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:164171800-164174800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:164171800-164176600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164172400-164175000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:164172400-164176200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:164172400-164180400	Weak transcription	K562	blood
10	chr6:164172600-164178400	Weak transcription	Right Atrium	heart
11	chr6:164172800-164174800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:164172800-164176200	Weak transcription	Primary B cells from cord blood	blood
13	chr6:164173400-164174800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:164173400-164178400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:164174600-164175200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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