Variant report

Variant	rs73017284
Chromosome Location	chr6:164172374-164172375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164167299..164170044-chr6:164171641..164173179,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12663209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58940838	0.87[EUR][1000 genomes]
rs60120666	1.00[ASN][1000 genomes]
rs66515534	1.00[ASN][1000 genomes]
rs66767192	0.87[EUR][1000 genomes]
rs67071357	0.87[EUR][1000 genomes]
rs6938954	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73017236	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73017240	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73017247	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73017275	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73019106	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019121	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019124	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164166800-164173600	Enhancers	Fetal Heart	heart
3	chr6:164167800-164177200	Weak transcription	HSMM	muscle
4	chr6:164168400-164172800	Enhancers	Fetal Muscle Leg	muscle
5	chr6:164169200-164172600	Enhancers	Brain Germinal Matrix	brain
6	chr6:164171000-164172600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:164171000-164172600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:164171000-164172800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:164171200-164172600	Enhancers	Fetal Brain Male	brain
10	chr6:164171200-164172800	Enhancers	NHEK	skin
11	chr6:164171200-164173000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:164171200-164173000	Enhancers	Fetal Thymus	thymus
13	chr6:164171400-164172400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:164171400-164172400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
15	chr6:164171400-164172400	Enhancers	K562	blood
16	chr6:164171400-164172600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:164171400-164172600	Enhancers	Right Ventricle	heart
18	chr6:164171400-164172600	Enhancers	GM12878-XiMat	blood
19	chr6:164171400-164172800	Enhancers	Esophagus	oesophagus
20	chr6:164171400-164173200	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:164171600-164172400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:164171600-164172600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:164171600-164172800	Enhancers	Primary B cells from cord blood	blood
24	chr6:164171600-164172800	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:164171600-164173600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr6:164171800-164172400	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:164171800-164172400	Enhancers	Brain Anterior Caudate	brain
28	chr6:164171800-164172400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:164171800-164172600	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr6:164171800-164172600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:164171800-164174800	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:164171800-164174800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:164171800-164176600	Weak transcription	Primary T cells from cord blood	blood
34	chr6:164172000-164172400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
35	chr6:164172000-164172800	Enhancers	HSMMtube	muscle
36	chr6:164172200-164172400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:164172200-164172400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:164172200-164172600	Enhancers	Right Atrium	heart
39	chr6:164172200-164185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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