Variant report

Variant	rs12664781
Chromosome Location	chr6:164092555-164092556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-5	chr6:164092353-164092730	XLOC_005912

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12209978	0.89[ASN][1000 genomes]
rs12214405	0.89[ASN][1000 genomes]
rs12663209	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665755	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12665812	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1407656	0.89[ASN][1000 genomes]
rs55660929	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55896086	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56262560	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56292260	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58218631	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58940838	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61555711	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66767192	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67071357	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68041511	0.94[ASN][1000 genomes]
rs6938954	0.89[EUR][1000 genomes]
rs73013417	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73017236	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73017240	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73017247	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73017275	0.89[EUR][1000 genomes]
rs73029220	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029224	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029225	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029241	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73029267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73029269	1.00[EUR][1000 genomes]
rs750810	0.94[ASN][1000 genomes]
rs7752027	0.94[ASN][1000 genomes]
rs7775940	0.89[ASN][1000 genomes]
rs9458881	0.89[ASN][1000 genomes]
rs9458883	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164086200-164092800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:164088400-164093000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:164089800-164092600	Enhancers	Primary B cells from cord blood	blood
4	chr6:164092200-164093000	Enhancers	Pancreas	Pancrea
5	chr6:164092400-164093000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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