Variant report

Variant	rs55666773
Chromosome Location	chr6:114468020-114468021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55796700	1.00[AFR][1000 genomes]
rs61420861	1.00[AFR][1000 genomes]
rs61490549	1.00[AMR][1000 genomes]
rs61511197	1.00[AFR][1000 genomes]
rs61710406	1.00[AFR][1000 genomes]
rs73767014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767059	1.00[AMR][1000 genomes]
rs73767060	1.00[AMR][1000 genomes]
rs73767064	1.00[AMR][1000 genomes]
rs73767068	1.00[AMR][1000 genomes]
rs73767069	1.00[AMR][1000 genomes]
rs73767070	1.00[AMR][1000 genomes]
rs73770055	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:114462800-114471400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:114466800-114468400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:114466800-114469200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:114466800-114473800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:114466800-114476600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:114467000-114468200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:114467000-114468400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:114467000-114468400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:114467000-114468800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:114467200-114468400	Weak transcription	HSMM	muscle
12	chr6:114467200-114468800	Enhancers	HepG2	liver
13	chr6:114467200-114472000	Weak transcription	Hela-S3	cervix
14	chr6:114467800-114475000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:114468000-114471800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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