Variant report

Variant	rs73767060
Chromosome Location	chr6:114490777-114490778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:114489134-114490792	HepG2	liver:	n/a	n/a
2	NFIC	chr6:114490507-114493106	HepG2	liver:	n/a	chr6:114490518-114490535 chr6:114490518-114490534
3	HEY1	chr6:114490495-114490815	HepG2	liver:	n/a	n/a
4	FOXA2	chr6:114490536-114493056	HepG2	liver:	n/a	chr6:114491160-114491172
5	RAD21	chr6:114490694-114491185	HepG2	liver:	n/a	chr6:114490912-114490931 chr6:114490917-114490929
6	MBD4	chr6:114490442-114491258	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114490498..114491435-chr6:114625509..114626136,2	MCF-7	breast:

Variant related genes	Relation type
HS3ST5	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55666773	1.00[AMR][1000 genomes]
rs61490549	1.00[AMR][1000 genomes]
rs73767014	1.00[AMR][1000 genomes]
rs73767059	1.00[AMR][1000 genomes]
rs73767064	1.00[AMR][1000 genomes]
rs73767068	1.00[AMR][1000 genomes]
rs73767069	1.00[AMR][1000 genomes]
rs73767070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1029370	chr6:114471446-114566884	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114476200-114493600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:114476200-114497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:114477000-114491800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:114485000-114491200	Enhancers	Fetal Intestine Small	intestine
5	chr6:114485400-114497800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:114488200-114490800	Enhancers	Brain Anterior Caudate	brain
7	chr6:114488600-114490800	Enhancers	Brain Hippocampus Middle	brain
8	chr6:114488600-114491800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:114489000-114491200	Enhancers	Stomach Mucosa	stomach
10	chr6:114489000-114496600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:114489200-114492200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:114489800-114491000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:114489800-114493400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:114489800-114494000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:114489800-114495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:114490000-114491200	Flanking Active TSS	HepG2	liver
17	chr6:114490000-114493600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:114490000-114502800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:114490600-114490800	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:114490600-114490800	Enhancers	Brain Substantia Nigra	brain
21	chr6:114490600-114490800	Enhancers	Fetal Intestine Large	intestine
22	chr6:114490600-114490800	Enhancers	Fetal Lung	lung
23	chr6:114490600-114490800	Enhancers	Gastric	stomach
24	chr6:114490600-114493200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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