Variant report

Variant	rs73767064
Chromosome Location	chr6:114515922-114515923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55666773	1.00[AMR][1000 genomes]
rs61490549	1.00[AMR][1000 genomes]
rs73767014	1.00[AMR][1000 genomes]
rs73767059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767060	1.00[AMR][1000 genomes]
rs73767066	1.00[AFR][1000 genomes]
rs73767068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73769408	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1029370	chr6:114471446-114566884	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114510200-114523200	Weak transcription	HSMM	muscle
2	chr6:114511600-114516800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:114514200-114517200	Enhancers	Stomach Mucosa	stomach
4	chr6:114515000-114517800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:114515200-114516000	Enhancers	HSMMtube	muscle
6	chr6:114515400-114516200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:114515400-114516600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:114515400-114516600	Enhancers	Adipose Nuclei	Adipose
9	chr6:114515400-114517000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:114515400-114517400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:114515400-114519200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:114515400-114519200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:114515600-114516000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:114515600-114516000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:114515600-114516200	Enhancers	Fetal Intestine Large	intestine
16	chr6:114515600-114516400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:114515600-114516800	Enhancers	Fetal Intestine Small	intestine
18	chr6:114515600-114516800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:114515600-114516800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:114515600-114517200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:114515600-114517200	Enhancers	Brain Substantia Nigra	brain
22	chr6:114515600-114517400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:114515600-114517600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:114515600-114518000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:114515600-114518600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:114515600-114519000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:114515800-114516000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:114515800-114516200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:114515800-114516200	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:114515800-114516200	Enhancers	Brain Hippocampus Middle	brain
31	chr6:114515800-114516400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:114515800-114516600	Enhancers	Brain Anterior Caudate	brain
33	chr6:114515800-114517600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:114515800-114518200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:114515800-114518200	Enhancers	HepG2	liver

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