Variant report

Variant	rs73767069
Chromosome Location	chr6:114524801-114524802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55666773	1.00[AMR][1000 genomes]
rs61490549	1.00[AMR][1000 genomes]
rs73767014	1.00[AMR][1000 genomes]
rs73767059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767060	1.00[AMR][1000 genomes]
rs73767064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767066	1.00[AFR][1000 genomes]
rs73767068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73769408	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1029370	chr6:114471446-114566884	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114516000-114536000	Weak transcription	HSMMtube	muscle
2	chr6:114517200-114537000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:114518200-114546600	Weak transcription	HepG2	liver
4	chr6:114522000-114525600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:114522400-114525200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:114522400-114525200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:114523400-114525200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:114524200-114525000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:114524200-114525000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:114524200-114525600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:114524400-114525000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:114524800-114525200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:114524800-114525400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:114524800-114526200	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links