Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:97780439..97783055-chr13:97875747..97878631,2	MCF-7	breast:
2	chr13:97773812..97776578-chr13:97779026..97783361,3	MCF-7	breast:
3	chr13:97781642..97783757-chr13:97842419..97845411,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10161888	0.87[EUR][1000 genomes]
rs16953867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3891672	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55736008	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59939527	0.80[EUR][1000 genomes]
rs7317617	0.87[EUR][1000 genomes]
rs7326670	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7327112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329164	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7332122	0.87[EUR][1000 genomes]
rs7335512	0.84[EUR][1000 genomes]
rs7339217	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73553557	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107562	0.80[EUR][1000 genomes]
rs7984448	0.87[EUR][1000 genomes]
rs7988970	0.87[EUR][1000 genomes]
rs9284175	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs947452	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9582110	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9584506	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97774000-97784400	Enhancers	Placenta	Placenta
2	chr13:97777200-97783400	Weak transcription	K562	blood
3	chr13:97778600-97784000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:97778800-97783600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:97778800-97783800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:97778800-97783800	Weak transcription	Brain Substantia Nigra	brain
7	chr13:97778800-97788200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:97779000-97786200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:97779000-97788400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:97779200-97782400	Weak transcription	NHDF-Ad	bronchial
11	chr13:97779200-97785600	Weak transcription	Lung	lung
12	chr13:97781200-97785400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:97781800-97782800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr13:97782200-97783400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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