Variant report

Variant	rs9582110
Chromosome Location	chr13:97772290-97772291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97770807..97773775-chr13:97872906..97876647,5	MCF-7	breast:
2	chr13:97772203..97773907-chr13:97847803..97849794,2	K562	blood:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10161888	0.84[EUR][1000 genomes]
rs16953867	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3891672	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55669814	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55736008	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7317617	0.84[EUR][1000 genomes]
rs7326670	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7327112	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7329164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7332122	0.84[EUR][1000 genomes]
rs7334833	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7335512	0.81[EUR][1000 genomes]
rs7339217	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553557	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7984448	0.84[EUR][1000 genomes]
rs7988970	0.84[EUR][1000 genomes]
rs9284175	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs947452	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9584506	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97762800-97773600	Weak transcription	K562	blood
2	chr13:97766800-97778200	Weak transcription	Esophagus	oesophagus
3	chr13:97767800-97776600	Weak transcription	Gastric	stomach
4	chr13:97767800-97777200	Weak transcription	Fetal Kidney	kidney
5	chr13:97768000-97772800	Weak transcription	NHDF-Ad	bronchial
6	chr13:97768000-97773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:97768000-97773000	Weak transcription	A549	lung
8	chr13:97768000-97777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:97768600-97774000	Weak transcription	Placenta	Placenta
10	chr13:97768800-97775600	Weak transcription	Lung	lung
11	chr13:97768800-97776200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:97769000-97778400	Weak transcription	Right Atrium	heart
13	chr13:97769200-97772600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr13:97769200-97772600	Weak transcription	HSMMtube	muscle
15	chr13:97769200-97772800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:97769200-97772800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:97769200-97772800	Weak transcription	NH-A	brain
18	chr13:97769200-97774800	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:97769400-97772400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:97769400-97772400	Weak transcription	Osteobl	bone
21	chr13:97769400-97772600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:97769400-97772800	Weak transcription	Brain Anterior Caudate	brain
23	chr13:97769400-97772800	Weak transcription	NHLF	lung
24	chr13:97769600-97772600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:97769600-97773000	Weak transcription	HSMM	muscle
26	chr13:97769600-97774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:97770000-97772400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr13:97770000-97772800	Weak transcription	Hela-S3	cervix
29	chr13:97770000-97774800	Weak transcription	Stomach Mucosa	stomach
30	chr13:97770200-97773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:97770200-97774000	Weak transcription	Right Ventricle	heart
32	chr13:97770200-97775000	Weak transcription	Aorta	Aorta
33	chr13:97770200-97775000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:97770200-97775000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr13:97770200-97776600	Weak transcription	Fetal Stomach	stomach
36	chr13:97770200-97777200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:97770400-97774000	Weak transcription	Fetal Heart	heart
38	chr13:97770400-97777000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr13:97770600-97772400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr13:97770600-97774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr13:97770800-97774000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr13:97770800-97775000	Weak transcription	Ovary	ovary
43	chr13:97770800-97775000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr13:97770800-97776200	Weak transcription	Left Ventricle	heart
45	chr13:97770800-97777400	Weak transcription	Psoas Muscle	Psoas
46	chr13:97771400-97773200	Enhancers	Colon Smooth Muscle	Colon
47	chr13:97771400-97775800	Enhancers	NHEK	skin
48	chr13:97771400-97777800	Enhancers	HMEC	breast
49	chr13:97771400-97779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr13:97771600-97772800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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