Variant report

Variant	rs9284175
Chromosome Location	chr13:97787010-97787011
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97766281..97768072-chr13:97784194..97787057,2	K562	blood:
2	chr13:97785432..97787983-chr13:97793170..97794870,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10161888	0.87[EUR][1000 genomes]
rs16953867	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3891672	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55669814	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55736008	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59939527	0.81[EUR][1000 genomes]
rs7317617	0.87[EUR][1000 genomes]
rs7326670	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7327112	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7329164	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332122	0.87[EUR][1000 genomes]
rs7334833	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7335512	0.84[EUR][1000 genomes]
rs7339217	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73553557	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74107562	0.81[EUR][1000 genomes]
rs7984448	0.87[EUR][1000 genomes]
rs7988970	0.87[EUR][1000 genomes]
rs947452	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9582110	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9584506	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97778800-97788200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:97779000-97788400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:97783400-97792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:97784000-97788600	Weak transcription	Brain Substantia Nigra	brain
5	chr13:97784400-97793400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:97784400-97793400	Weak transcription	K562	blood
7	chr13:97785800-97787200	Enhancers	Gastric	stomach
8	chr13:97785800-97787200	Enhancers	Stomach Mucosa	stomach
9	chr13:97786200-97787400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:97786200-97787600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:97786600-97793400	Weak transcription	Colonic Mucosa	Colon
12	chr13:97786600-97793400	Weak transcription	Esophagus	oesophagus
13	chr13:97786800-97787400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:97786800-97788000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr13:97786800-97788600	Enhancers	A549	lung
16	chr13:97786800-97788800	Weak transcription	Pancreas	Pancrea
17	chr13:97786800-97792000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:97786800-97792000	Weak transcription	NHDF-Ad	bronchial
19	chr13:97787000-97788400	Weak transcription	Placenta	Placenta
20	chr13:97787000-97788600	Enhancers	HepG2	liver
21	chr13:97787000-97792000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr13:97787000-97792000	Weak transcription	HSMMtube	muscle
23	chr13:97787000-97793000	Weak transcription	NH-A	brain
24	chr13:97787000-97793200	Weak transcription	Hela-S3	cervix
25	chr13:97787000-97799000	Weak transcription	Lung	lung

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