Variant report

Variant	rs10161888
Chromosome Location	chr13:97802112-97802113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97800826..97802960-chr13:97804516..97806810,2	K562	blood:
2	chr13:97799762..97802960-chr13:97803029..97806016,3	K562	blood:
3	chr13:97791984..97795803-chr13:97797601..97802176,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16953867	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16953933	0.87[EUR][1000 genomes]
rs3891672	0.81[EUR][1000 genomes]
rs3904139	0.87[EUR][1000 genomes]
rs55669814	0.87[EUR][1000 genomes]
rs55736008	0.87[EUR][1000 genomes]
rs56331763	0.84[EUR][1000 genomes]
rs59939527	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7317617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7326329	0.87[EUR][1000 genomes]
rs7326670	0.84[EUR][1000 genomes]
rs7327054	0.87[EUR][1000 genomes]
rs7327112	0.87[EUR][1000 genomes]
rs7329164	0.84[EUR][1000 genomes]
rs7332122	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7332935	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7334833	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7335512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7339217	0.84[EUR][1000 genomes]
rs73553557	0.87[EUR][1000 genomes]
rs73553593	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73555705	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7358964	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs74107562	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7983752	0.87[EUR][1000 genomes]
rs7984448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988970	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9284175	0.87[EUR][1000 genomes]
rs947452	0.90[EUR][1000 genomes]
rs9582110	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9584506	0.84[EUR][1000 genomes]
rs9652111	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97799200-97814800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:97801200-97802600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:97801800-97802400	Enhancers	K562	blood

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