Variant report

Variant	rs73555705
Chromosome Location	chr13:97839136-97839137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10161888	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16953933	0.97[EUR][1000 genomes]
rs3904139	0.97[EUR][1000 genomes]
rs56331763	0.93[EUR][1000 genomes]
rs59939527	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7317617	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7326329	0.97[EUR][1000 genomes]
rs7327054	0.97[EUR][1000 genomes]
rs7332122	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332935	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7334833	0.93[EUR][1000 genomes]
rs7335512	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73553593	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7358964	0.85[AMR][1000 genomes]
rs74107562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7983752	0.97[EUR][1000 genomes]
rs7984448	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7988970	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs947452	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97830200-97843400	Weak transcription	Spleen	Spleen
2	chr13:97832800-97840400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:97836400-97841200	Enhancers	Placenta	Placenta
4	chr13:97837200-97839600	Weak transcription	Ovary	ovary
5	chr13:97837800-97839600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:97838600-97844000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:97838800-97843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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