Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10161888	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16953867	1.00[CEU][hapmap]
rs16953933	1.00[EUR][1000 genomes]
rs3904139	1.00[EUR][1000 genomes]
rs56331763	0.97[EUR][1000 genomes]
rs59939527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7317617	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7326329	1.00[EUR][1000 genomes]
rs7327054	1.00[EUR][1000 genomes]
rs7332122	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7334833	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7335512	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73553593	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73555705	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7358964	0.85[AMR][1000 genomes]
rs74107562	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7983752	1.00[EUR][1000 genomes]
rs7984448	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7988970	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9582110	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97830200-97843400	Weak transcription	Spleen	Spleen
2	chr13:97836400-97841200	Enhancers	Placenta	Placenta
3	chr13:97838600-97844000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:97838800-97843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:97839600-97840800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:97839600-97844800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:97840200-97841000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:97840200-97841200	Enhancers	Ovary	ovary
9	chr13:97840200-97841400	Enhancers	NHEK	skin
10	chr13:97840400-97840800	Enhancers	HSMMtube	muscle
11	chr13:97840400-97841000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:97840400-97841000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:97840400-97841000	Enhancers	HMEC	breast
14	chr13:97840400-97841400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:97840400-97841600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr13:97840600-97840800	Enhancers	Thymus	Thymus
17	chr13:97840600-97841200	Enhancers	Fetal Thymus	thymus

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