Variant report

Variant	rs55698434
Chromosome Location	chr1:210747122-210747123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11811274	1.00[EUR][1000 genomes]
rs6662350	1.00[EUR][1000 genomes]
rs73077512	1.00[EUR][1000 genomes]
rs73077514	1.00[EUR][1000 genomes]
rs73077516	1.00[EUR][1000 genomes]
rs73077518	1.00[EUR][1000 genomes]
rs73077522	1.00[EUR][1000 genomes]
rs73079518	1.00[EUR][1000 genomes]
rs73079521	1.00[EUR][1000 genomes]
rs73079522	1.00[EUR][1000 genomes]
rs73079536	1.00[EUR][1000 genomes]
rs73079538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210739400-210753000	Weak transcription	HSMMtube	muscle
2	chr1:210746600-210747200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:210746600-210747400	Enhancers	Brain Cingulate Gyrus	brain
4	chr1:210746600-210747800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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