Variant report

Variant	rs73079518
Chromosome Location	chr1:210705688-210705689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11811274	1.00[EUR][1000 genomes]
rs55698434	1.00[EUR][1000 genomes]
rs6662350	1.00[EUR][1000 genomes]
rs73077512	1.00[EUR][1000 genomes]
rs73077514	1.00[EUR][1000 genomes]
rs73077516	1.00[EUR][1000 genomes]
rs73077518	1.00[EUR][1000 genomes]
rs73077522	1.00[EUR][1000 genomes]
rs73079521	1.00[EUR][1000 genomes]
rs73079522	1.00[EUR][1000 genomes]
rs73079536	1.00[EUR][1000 genomes]
rs73079538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv549106	chr1:210698719-210736508	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210680600-210731000	Weak transcription	HSMM	muscle
3	chr1:210700800-210708800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:210700800-210709200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210703200-210708200	Weak transcription	HSMMtube	muscle
6	chr1:210704000-210709400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:210704200-210708600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:210704200-210708800	Weak transcription	Brain Germinal Matrix	brain
9	chr1:210704400-210708400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:210704400-210708600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:210704600-210706600	Enhancers	Fetal Heart	heart
12	chr1:210705000-210708600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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