Variant report

Variant	rs73077514
Chromosome Location	chr1:210664984-210664985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11811274	1.00[EUR][1000 genomes]
rs55698434	1.00[EUR][1000 genomes]
rs6662350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077518	1.00[EUR][1000 genomes]
rs73077522	1.00[EUR][1000 genomes]
rs73079518	1.00[EUR][1000 genomes]
rs73079521	1.00[EUR][1000 genomes]
rs73079522	1.00[EUR][1000 genomes]
rs73079536	1.00[EUR][1000 genomes]
rs73079538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210653800-210678800	Weak transcription	HSMM	muscle
4	chr1:210657000-210669600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:210663600-210669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210663600-210672400	Weak transcription	HSMMtube	muscle
7	chr1:210664800-210666000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:210664800-210669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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